EST details — SGN-C28078
| Search information |
| Request: 28078 | Match: SGN-C28078 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C28078 | Clone name: cLEF-46-H9 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C180300 is on microarray TOM1: SGN-S1-1-7.1.19.4
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180300 [TUS-34-A2] | Trace: SGN-T1620 | EST: SGN-E378195 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C180300 [TUS-34-A2] | Trace: SGN-T193527 | EST: SGN-E392201 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E247315 | Length: 469 bp (893 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247315 [] (trimmed)
GCAGATTTTCAGTCTGTACTTAGCACTTTCACTCGTTATAGTCGGTTAAGAGTCATTGCTGAACTTCGGCATGGGGATCTGTTTCACTCGGCCAA
TATTGTTTCAAGCATTGAATTTGATCGGGATGATGAGTTGTTTGCTACTGCTGGAGTTTCACGGCGTATAAAAGTTTTTGACTTCTCTTCAGTTG
TAAATGAACCTGCAGATGCACACTGCCCTGTTGTTGAAATGTCTACCCGATCTAAGCTGAGCTGCTTGAGTTGGAATAAGTATACCAAGAACCAC
ATAGCTAGTAGTGATTATGATGGAATAGTAACTGTATGGGATGTGACGACTAGACAGAGTGTGATGGAATATGAAGAGCATGAGAAACGGGCTTG
GAGTGTTGATTTTTCACGCACAGAACCCTCGATGCTTGTATCTGGCAGTGATGATTGTAAGGTCAAAGTTTGGTGCACGAAGCAAGAAG
TATTGTTTCAAGCATTGAATTTGATCGGGATGATGAGTTGTTTGCTACTGCTGGAGTTTCACGGCGTATAAAAGTTTTTGACTTCTCTTCAGTTG
TAAATGAACCTGCAGATGCACACTGCCCTGTTGTTGAAATGTCTACCCGATCTAAGCTGAGCTGCTTGAGTTGGAATAAGTATACCAAGAACCAC
ATAGCTAGTAGTGATTATGATGGAATAGTAACTGTATGGGATGTGACGACTAGACAGAGTGTGATGGAATATGAAGAGCATGAGAAACGGGCTTG
GAGTGTTGATTTTTCACGCACAGAACCCTCGATGCTTGTATCTGGCAGTGATGATTGTAAGGTCAAAGTTTGGTGCACGAAGCAAGAAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E247315] | SGN-U579490 | Tomato 200607 | Build 2 | 23 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T61726 [Download] [View] | Facility Assigned ID: TMGHA41TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.970 | Expected Error Rate: 0.0168 | Quality Trim Threshold: 14.5 |
Working
