EST details — SGN-C28775
Search information |
Request: 28775 | Match: SGN-C28775 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C28775 | Clone name: cLEF-49-D11 |
| ||
Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176971 is on microarray TOM1: SGN-S1-1-8.2.8.6
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C176971 [TUS-25-F9] | Trace: SGN-T181891 | EST: SGN-E368938 | Direction: 3' | Facility: INRA |
Clone: SGN-C176971 [TUS-25-F9] | Trace: SGN-T181892 | EST: SGN-E368939 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E248902 | Length: 560 bp (912 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E248902 [] (trimmed)
GAACAACTTCCACAGGAACAAACAATCATGAGAACTATTTCCCTTGATTCAACCTCATTTTCACTTGTTGAGTTCCATGGTACCAAGAATTTGGC
ACAAAGCAAGATCAATAGATCGGTTTCGTTGATTCCAATGGCGAGGTCTCAATTTCAGCCTAAAATAAGACGTGACATTGGTACTAGCAATAGAA
ATCCAAGTTTTAGCTGGATGGCAACAGTTGGAGAGAAAGTGCACAACTCCACGGTTCCTACTTCTGTTCCTGTTCGAGTTGCACTTGAATTGCTT
CAAGCTGGCCATCGTTATTTAGATGTCAGAACTACTGAGGAGTACAATGATGGGCATGCTGCTGGAGCCATAAACATTCCTTACATGCTTAGAAT
TGGCTCAGGGATGATAAAGAACCCCAATTTCTTGGAGGAAGTGTTGGAACAATTCGGGAAGGATGATGAGATTATAGTTGGATGCCAGTTGGGTA
AGAGATCATTTATGGCTGCAACTGAACTTCTTGCTGCTGGATTTACTGGGGTGACTGACATTGCTGGTGGATATGCTGCGTGGAC
ACAAAGCAAGATCAATAGATCGGTTTCGTTGATTCCAATGGCGAGGTCTCAATTTCAGCCTAAAATAAGACGTGACATTGGTACTAGCAATAGAA
ATCCAAGTTTTAGCTGGATGGCAACAGTTGGAGAGAAAGTGCACAACTCCACGGTTCCTACTTCTGTTCCTGTTCGAGTTGCACTTGAATTGCTT
CAAGCTGGCCATCGTTATTTAGATGTCAGAACTACTGAGGAGTACAATGATGGGCATGCTGCTGGAGCCATAAACATTCCTTACATGCTTAGAAT
TGGCTCAGGGATGATAAAGAACCCCAATTTCTTGGAGGAAGTGTTGGAACAATTCGGGAAGGATGATGAGATTATAGTTGGATGCCAGTTGGGTA
AGAGATCATTTATGGCTGCAACTGAACTTCTTGCTGCTGGATTTACTGGGGTGACTGACATTGCTGGTGGATATGCTGCGTGGAC
Unigenes |
Current Unigene builds | |||||
[SGN-E248902] | SGN-U566924 | Tomato 200607 | Build 2 | 46 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T62410 [Download] [View] | Facility Assigned ID: TMGHM18TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.974 | Expected Error Rate: 0.0057 | Quality Trim Threshold: 14.5 |