EST details — SGN-C28874
Search information |
Request: 28874 | Match: SGN-C28874 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C28874 | Clone name: cLEF-49-H3 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C177031 is on microarray TOM1: SGN-S1-1-4.4.8.10
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C177031 [TUS-25-H21] | Trace: SGN-T181906 | EST: SGN-E368953 | Direction: 3' | Facility: INRA |
Clone: SGN-C177031 [TUS-25-H21] | Trace: SGN-T181907 | EST: SGN-E368954 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E249081 | Length: 612 bp (900 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E249081 [] (trimmed)
TCCGTTTATAGTACTATTTGCCTCGGTGAAATTCTCAGCTTGAGTAAGTCTTGCTTTTCATTTGTGAAGGTCAATAAAGTGGAGGATTCTATACA
ATTCATTAAAGCCAGAGAAAAGCCACTTGCAGCATATCTGTTCACAAGCAACAAGAAACTGGAGGAGGAGTTTGTCATGAATATATCAGCAGGGG
GTCTGCTTATCAATGACACCACTTTACAAGTTGCGCTTTCTACTCTTCCATTTGGAGGAGTAGGGGAAAGTGGAATGGGTTCATGTCATGGCAAA
TTTTCGTTTGATACTTTCAGCCATAAGAAGGCAGTTCTACGTCGCAGTTTTGCTGGGGATGTACCTGCAAGATATCCACCTTATACAGCTGGCAA
GGCGCGATTTCTCAAAGCCCTGTTAAATGGTGATATAATCGGGCTCATTCGTGCTTTGATTGGGTGGTAAAAGTTCCATTCAATATTTGAATCTG
GGATTTCTGGTGTGAGCCCACTACTACACTTGTAAGTAGTTGATCATCCTCTACCCTTGAGGCATAAATTACCTTCCACATTTTCAAGTCACTCC
TTTTATAAATTTCATGTATCGCTATGTTACTATATACTATTT
ATTCATTAAAGCCAGAGAAAAGCCACTTGCAGCATATCTGTTCACAAGCAACAAGAAACTGGAGGAGGAGTTTGTCATGAATATATCAGCAGGGG
GTCTGCTTATCAATGACACCACTTTACAAGTTGCGCTTTCTACTCTTCCATTTGGAGGAGTAGGGGAAAGTGGAATGGGTTCATGTCATGGCAAA
TTTTCGTTTGATACTTTCAGCCATAAGAAGGCAGTTCTACGTCGCAGTTTTGCTGGGGATGTACCTGCAAGATATCCACCTTATACAGCTGGCAA
GGCGCGATTTCTCAAAGCCCTGTTAAATGGTGATATAATCGGGCTCATTCGTGCTTTGATTGGGTGGTAAAAGTTCCATTCAATATTTGAATCTG
GGATTTCTGGTGTGAGCCCACTACTACACTTGTAAGTAGTTGATCATCCTCTACCCTTGAGGCATAAATTACCTTCCACATTTTCAAGTCACTCC
TTTTATAAATTTCATGTATCGCTATGTTACTATATACTATTT
Unigenes |
Current Unigene builds | |||||
[SGN-E249081] | SGN-U579227 | Tomato 200607 | Build 2 | 59 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T62589 [Download] [View] | Facility Assigned ID: TMGHM38TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.976 | Expected Error Rate: 0.0138 | Quality Trim Threshold: 12.5 |