EST details — SGN-C28908
Search information |
Request: 28908 | Match: SGN-C28908 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C28908 | Clone name: cLEF-49-J15 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C177055 is on microarray TOM1: SGN-S1-1-4.1.8.11
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C177055 [TUS-25-I21] | Trace: SGN-T181678 | EST: SGN-E369816 | Direction: 3' | Facility: INRA |
Clone: SGN-C177055 [TUS-25-I21] | Trace: SGN-T181679 | EST: SGN-E369817 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E248919 | Length: 484 bp (948 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E248919 [] (trimmed)
ACTTTTCCCCTGGAAAGGCAACGTTCAAACTCACAAATTACTATTCTTTCAAATGTTTTCTTCTTTCATAATCCAACTTTCGATCTCTAATCAAT
CTTTTTCTTAAGCCAAAACCAAGATCCCCAATTTTTAGGGTTCCTAATCCACCCAAAAAAGCTCAAAATCTTCAAAAAGATCCATTTCTCAGAGC
ACTGTTTATTGGATATTTTTTCTTAAATCAACTTTTTTCGAATACCCTTTTGAGTTCTGATGAAAACCCATTAATTTTCTTGGTTAGTTTGGTAG
TTTTTCAGACACCCTTTTGAGTTCTGATCAAACCCTGAAATTTGCTTGGTTAGTATTGTGGATTATTTTATTTTATATGATCGAAGATGTATAGC
AATTTCAAGGAGCAAGCAATTGAGTACGTAAGGCAAGCAGTGCAAGAGGACAATAGTGGAAACTATGCAAAGGCATTTCCGTTGTATATGAATGC
ATTGGAGTA
CTTTTTCTTAAGCCAAAACCAAGATCCCCAATTTTTAGGGTTCCTAATCCACCCAAAAAAGCTCAAAATCTTCAAAAAGATCCATTTCTCAGAGC
ACTGTTTATTGGATATTTTTTCTTAAATCAACTTTTTTCGAATACCCTTTTGAGTTCTGATGAAAACCCATTAATTTTCTTGGTTAGTTTGGTAG
TTTTTCAGACACCCTTTTGAGTTCTGATCAAACCCTGAAATTTGCTTGGTTAGTATTGTGGATTATTTTATTTTATATGATCGAAGATGTATAGC
AATTTCAAGGAGCAAGCAATTGAGTACGTAAGGCAAGCAGTGCAAGAGGACAATAGTGGAAACTATGCAAAGGCATTTCCGTTGTATATGAATGC
ATTGGAGTA
Unigenes |
Current Unigene builds | |||||
[SGN-E248919] | SGN-U573760 | Tomato 200607 | Build 2 | 40 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T62427 [Download] [View] | Facility Assigned ID: TMGHM56TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.927 | Expected Error Rate: 0.0113 | Quality Trim Threshold: 14.5 |