EST details — SGN-C28908
| Search information |
| Request: 28908 | Match: SGN-C28908 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C28908 | Clone name: cLEF-49-J15 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C177055 is on microarray TOM1: SGN-S1-1-4.1.8.11
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C177055 [TUS-25-I21] | Trace: SGN-T181678 | EST: SGN-E369816 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177055 [TUS-25-I21] | Trace: SGN-T181679 | EST: SGN-E369817 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E248919 | Length: 484 bp (948 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E248919 [] (trimmed)
ACTTTTCCCCTGGAAAGGCAACGTTCAAACTCACAAATTACTATTCTTTCAAATGTTTTCTTCTTTCATAATCCAACTTTCGATCTCTAATCAAT
CTTTTTCTTAAGCCAAAACCAAGATCCCCAATTTTTAGGGTTCCTAATCCACCCAAAAAAGCTCAAAATCTTCAAAAAGATCCATTTCTCAGAGC
ACTGTTTATTGGATATTTTTTCTTAAATCAACTTTTTTCGAATACCCTTTTGAGTTCTGATGAAAACCCATTAATTTTCTTGGTTAGTTTGGTAG
TTTTTCAGACACCCTTTTGAGTTCTGATCAAACCCTGAAATTTGCTTGGTTAGTATTGTGGATTATTTTATTTTATATGATCGAAGATGTATAGC
AATTTCAAGGAGCAAGCAATTGAGTACGTAAGGCAAGCAGTGCAAGAGGACAATAGTGGAAACTATGCAAAGGCATTTCCGTTGTATATGAATGC
ATTGGAGTA
CTTTTTCTTAAGCCAAAACCAAGATCCCCAATTTTTAGGGTTCCTAATCCACCCAAAAAAGCTCAAAATCTTCAAAAAGATCCATTTCTCAGAGC
ACTGTTTATTGGATATTTTTTCTTAAATCAACTTTTTTCGAATACCCTTTTGAGTTCTGATGAAAACCCATTAATTTTCTTGGTTAGTTTGGTAG
TTTTTCAGACACCCTTTTGAGTTCTGATCAAACCCTGAAATTTGCTTGGTTAGTATTGTGGATTATTTTATTTTATATGATCGAAGATGTATAGC
AATTTCAAGGAGCAAGCAATTGAGTACGTAAGGCAAGCAGTGCAAGAGGACAATAGTGGAAACTATGCAAAGGCATTTCCGTTGTATATGAATGC
ATTGGAGTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E248919] | SGN-U573760 | Tomato 200607 | Build 2 | 40 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T62427 [Download] [View] | Facility Assigned ID: TMGHM56TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.927 | Expected Error Rate: 0.0113 | Quality Trim Threshold: 14.5 |
Working
