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EST details — SGN-C3278

Search information 
Request: 3278Match: SGN-C3278
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C3278Clone name: cLEC-20-B14
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C173512 is on microarray TOM1: SGN-S1-1-3.2.18.8
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C173512 [TUS-16-F6] Trace: SGN-T196908 EST: SGN-E395582 Direction: 3' Facility: INRA
Clone: SGN-C173512 [TUS-16-F6] Trace: SGN-T196909 EST: SGN-E395583 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E206048Length: 434 bp (868 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E206048 [] (trimmed) GCTTTGGGGGCTGAGTTATACATAACAGATCCAGCCAAAGGTTTAGATGGATTGCTTCAGAAGGCACAAGAGATTCTAGATAGGACGCCAAACAG
TCATTTTTTTCGTCAGTTTGAGAATCCTGCCAATCCAAAGATTCACTATGAAACAACTGGACCAGAAATATGGAAGAGCACAGGAGGAAAAGTTG
ATATTTTCATTGCAGGGATTGGGACTGGAGGCACGGTGACGGGAGCAGGAAGGTTCCTTAAGGAGAAGAATCCAGAAATAAAGGTATATGGTGTA
GAACCAGCTGAAAATGCGATTCTAAACGGAGGACAACTAGGGCCACATAAAATCCAAGGAATTGGTGCTAGTTTCATCCCAGCCGTCCTCGATCA
AAGCATCCTGGATGGAGTTCTTCAAGTATCTAGTAATGAAGCTATTGAAATGAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E206048] SGN-U579281 Tomato 200607 Build 2 17 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T27830 [Download] [View] Facility Assigned ID: TCADB07TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.967 Expected Error Rate: 0.0076 Quality Trim Threshold: 14.5