EST details — SGN-C4083

Search information 
Request: 4083Match: SGN-C4083
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C4083Clone name: cLEC-23-H9
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C173646 is on microarray TOM1: SGN-S1-1-5.3.18.17
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C173646 [TUS-16-K20] Trace: SGN-T196768 EST: SGN-E395442 Direction: 3' Facility: INRA
Clone: SGN-C173646 [TUS-16-K20] Trace: SGN-T196769 EST: SGN-E395443 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E206358Length: 292 bp (835 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E206358 [] (trimmed) CTGTTAGTACCAAGTGTTCAAGAGCTTGCCAAACAGCACCTAACCAATATTCCGGACAGGTATGTCCGCCCACAACAAGAATCTCTGGTCGTATC
TTCCGGAGCATCAGTTCCAGTTATCGATCTTCAAAAGTTGATTTCAGGGAATACCATAGATTCTGAGCTACAAAAGCTTCACTCTGCTTGCCAAG
AATGGGGTTTCCTACAGGTTGTAAACCATGGAGTGACACCTTCGTTACTGGAGGACTTCAAGAGAGAGGGTATTCAATTGGTCAAACTTCCAATG
GAAGAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E206358] SGN-U565164 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T28317 [Download] [View] Facility Assigned ID: TCADM41TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.979 Expected Error Rate: 0.0153 Quality Trim Threshold: 14.5