EST details — SGN-C47529
| Search information |
| Request: 47529 | Match: SGN-C47529 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C47529 | Clone name: cLEI-16-I2 |
| ||
| Library Name: cLEI | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: whole seedlings
Development Stage: germinating seed
Microarray: Alias clone SGN-C177683 is on microarray TOM1: SGN-S1-1-8.4.6.7
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C177683 [TUS-27-D1] | Trace: SGN-T183129 | EST: SGN-E370892 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177683 [TUS-27-D1] | Trace: SGN-T183130 | EST: SGN-E370893 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E269000 | Length: 580 bp (857 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E269000 [] (trimmed)
AGAGCTCCTCCAAATATCGTAAGCAAAGTATTGAGTGTTGTGACTGGTAACACTTGCAACATGAGCAACACACTTCCAGGTGCAACAGGATCTTG
TGTTCCTTGGAGAAAAACAGACCTGAAGCATTCAAGCAATGAAATTTATGTTGATTTAGTTGAAGAAATGGATGCTACTATAAATAGAGACGGGG
TTCTGGTGAAATGTGAGATCTATGGTGAAGTTCAAGTGAATTCTCATCTTTCTGGTCTTCCTGATCTTACCCTTTCATTTGCAAATACTTCCATC
CTGAATGATGTAAGATTCCATCCTTGTGTTCGACTACGACCATGGGAATCAAACCAAATTCTGTCTTTTGTTCCTCCTGATGGACAATTCAAGCT
CATGAGCTACAGAATAAAGAAGTTGAAGAGCACCCCTATATATGTAAAGCCACAAATTACTTCAGACTCAAGGACATGTCGTATTAGCTTGTTAG
TTGGGATACGCAATGATCCTGGGAAGGCAATTGATGATATAAACGTTCAATTTCAACTACCCCCTCGCGTTTTATCTGCAGATCTTACATCAAAT
TATGGAACAG
TGTTCCTTGGAGAAAAACAGACCTGAAGCATTCAAGCAATGAAATTTATGTTGATTTAGTTGAAGAAATGGATGCTACTATAAATAGAGACGGGG
TTCTGGTGAAATGTGAGATCTATGGTGAAGTTCAAGTGAATTCTCATCTTTCTGGTCTTCCTGATCTTACCCTTTCATTTGCAAATACTTCCATC
CTGAATGATGTAAGATTCCATCCTTGTGTTCGACTACGACCATGGGAATCAAACCAAATTCTGTCTTTTGTTCCTCCTGATGGACAATTCAAGCT
CATGAGCTACAGAATAAAGAAGTTGAAGAGCACCCCTATATATGTAAAGCCACAAATTACTTCAGACTCAAGGACATGTCGTATTAGCTTGTTAG
TTGGGATACGCAATGATCCTGGGAAGGCAATTGATGATATAAACGTTCAATTTCAACTACCCCCTCGCGTTTTATCTGCAGATCTTACATCAAAT
TATGGAACAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E269000] | SGN-U576835 | Tomato 200607 | Build 2 | 20 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T83224 [Download] [View] | Facility Assigned ID: TGSCJ49TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.970 | Expected Error Rate: 0.0049 | Quality Trim Threshold: 14.5 |
Working
