EST details — SGN-C47529
Search information |
Request: 47529 | Match: SGN-C47529 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C47529 | Clone name: cLEI-16-I2 |
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Library Name: cLEI | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: whole seedlings
Development Stage: germinating seed
Microarray: Alias clone SGN-C177683 is on microarray TOM1: SGN-S1-1-8.4.6.7
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C177683 [TUS-27-D1] | Trace: SGN-T183129 | EST: SGN-E370892 | Direction: 3' | Facility: INRA |
Clone: SGN-C177683 [TUS-27-D1] | Trace: SGN-T183130 | EST: SGN-E370893 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E269000 | Length: 580 bp (857 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E269000 [] (trimmed)
AGAGCTCCTCCAAATATCGTAAGCAAAGTATTGAGTGTTGTGACTGGTAACACTTGCAACATGAGCAACACACTTCCAGGTGCAACAGGATCTTG
TGTTCCTTGGAGAAAAACAGACCTGAAGCATTCAAGCAATGAAATTTATGTTGATTTAGTTGAAGAAATGGATGCTACTATAAATAGAGACGGGG
TTCTGGTGAAATGTGAGATCTATGGTGAAGTTCAAGTGAATTCTCATCTTTCTGGTCTTCCTGATCTTACCCTTTCATTTGCAAATACTTCCATC
CTGAATGATGTAAGATTCCATCCTTGTGTTCGACTACGACCATGGGAATCAAACCAAATTCTGTCTTTTGTTCCTCCTGATGGACAATTCAAGCT
CATGAGCTACAGAATAAAGAAGTTGAAGAGCACCCCTATATATGTAAAGCCACAAATTACTTCAGACTCAAGGACATGTCGTATTAGCTTGTTAG
TTGGGATACGCAATGATCCTGGGAAGGCAATTGATGATATAAACGTTCAATTTCAACTACCCCCTCGCGTTTTATCTGCAGATCTTACATCAAAT
TATGGAACAG
TGTTCCTTGGAGAAAAACAGACCTGAAGCATTCAAGCAATGAAATTTATGTTGATTTAGTTGAAGAAATGGATGCTACTATAAATAGAGACGGGG
TTCTGGTGAAATGTGAGATCTATGGTGAAGTTCAAGTGAATTCTCATCTTTCTGGTCTTCCTGATCTTACCCTTTCATTTGCAAATACTTCCATC
CTGAATGATGTAAGATTCCATCCTTGTGTTCGACTACGACCATGGGAATCAAACCAAATTCTGTCTTTTGTTCCTCCTGATGGACAATTCAAGCT
CATGAGCTACAGAATAAAGAAGTTGAAGAGCACCCCTATATATGTAAAGCCACAAATTACTTCAGACTCAAGGACATGTCGTATTAGCTTGTTAG
TTGGGATACGCAATGATCCTGGGAAGGCAATTGATGATATAAACGTTCAATTTCAACTACCCCCTCGCGTTTTATCTGCAGATCTTACATCAAAT
TATGGAACAG
Unigenes |
Current Unigene builds | |||||
[SGN-E269000] | SGN-U576835 | Tomato 200607 | Build 2 | 20 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T83224 [Download] [View] | Facility Assigned ID: TGSCJ49TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.970 | Expected Error Rate: 0.0049 | Quality Trim Threshold: 14.5 |