EST details — SGN-C62154
| Search information |
| Request: 62154 | Match: SGN-C62154 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C62154 | Clone name: cLEM-1-K17 |
| ||
| Library Name: cLEM | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit
Development Stage: immature green fruit
Microarray: Alias clone SGN-C177779 is on microarray TOM1: SGN-S1-1-8.4.6.8
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C177779 [TUS-27-H1] | Trace: SGN-T183149 | EST: SGN-E370912 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177779 [TUS-27-H1] | Trace: SGN-T183150 | EST: SGN-E370913 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E270341 | Length: 406 bp (1186 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E270341 [] (trimmed)
AAGGCAAAGCAAGAGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGAAAGGAGC
AATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATG
GTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATC
AGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTT
CTTTCGGGTCTGTGCTTTTAAATAGT
AATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATG
GTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATC
AGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTT
CTTTCGGGTCTGTGCTTTTAAATAGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E270341] | SGN-U577084 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T83714 [Download] [View] | Facility Assigned ID: TGFAA69TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.973 | Expected Error Rate: 0.0092 | Quality Trim Threshold: 14.5 |
Working
