EST details — SGN-C69754
Search information |
Request: 69754 | Match: SGN-C69754 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C69754 | Clone name: cLER-12-H6 |
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Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C185353 is on microarray TOM1: SGN-S1-1-2.3.9.2
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C185353 [TUS-47-C15] | Trace: SGN-T192057 | EST: SGN-E390731 | Direction: 3' | Facility: INRA |
Clone: SGN-C185353 [TUS-47-C15] | Trace: SGN-T192058 | EST: SGN-E390732 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E283323 | Length: 620 bp (964 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E283323 [] (trimmed)
TTGGAGTTTGACAATTTTCCAGCCATAGTTAAATTTTACACCAACAATAAATATAGCTTCTCATCACGCTAAATAGATGCTCGATGCATACAATT
TATAAGTACTAAAGACCTCATCAGTTTGAGAACAAATGAACAGATTCCATCTTTTCCAGACGGGAAAAAATAGTTGTACGAAAGCATAAAAGAGG
ACAATTTCTGTTTCAACTTCTGGTACATATGCAAATGATATAAACTACTTGATATATTGCGAAACCCACTTAAAGCCATCACCATAACCCATTTT
GCGTACAATACTGCACATAAACACCTCCAAGGGACGAACACTAGAATCAGCTAGATTCACCTTACCCTTGCCAGTAGTGACACCAGTCAACCCAA
GGTGATAACGCAACTCATCTTCTGAGGCAGCATACGGTATGTCTATCTTGTTTCCCAAAATGAGGAAGGGAACAGTCGCTAGGGACTCATCAGAT
AGCAGTGCGTCTAATTCTTTCTTTGACTCAGCGAAGCGCTCTTTGTCATAAGCATCTACCAGGTATACAACAGCATCAACCTTAGCATAGTAATC
CTTCCAAACACGGCGAGCGATCTGATGACCTCCTAAATCAAACGCTTTGA
TATAAGTACTAAAGACCTCATCAGTTTGAGAACAAATGAACAGATTCCATCTTTTCCAGACGGGAAAAAATAGTTGTACGAAAGCATAAAAGAGG
ACAATTTCTGTTTCAACTTCTGGTACATATGCAAATGATATAAACTACTTGATATATTGCGAAACCCACTTAAAGCCATCACCATAACCCATTTT
GCGTACAATACTGCACATAAACACCTCCAAGGGACGAACACTAGAATCAGCTAGATTCACCTTACCCTTGCCAGTAGTGACACCAGTCAACCCAA
GGTGATAACGCAACTCATCTTCTGAGGCAGCATACGGTATGTCTATCTTGTTTCCCAAAATGAGGAAGGGAACAGTCGCTAGGGACTCATCAGAT
AGCAGTGCGTCTAATTCTTTCTTTGACTCAGCGAAGCGCTCTTTGTCATAAGCATCTACCAGGTATACAACAGCATCAACCTTAGCATAGTAATC
CTTCCAAACACGGCGAGCGATCTGATGACCTCCTAAATCAAACGCTTTGA
Unigenes |
Current Unigene builds | |||||
[SGN-E283323] | SGN-U579915 | Tomato 200607 | Build 2 | 80 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T94290 [Download] [View] | Facility Assigned ID: TPRBV39TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.970 | Expected Error Rate: 0.0077 | Quality Trim Threshold: 14.5 |