EST details — SGN-C70627
| Search information |
| Request: 70627 | Match: SGN-C70627 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C70627 | Clone name: cLER-15-G4 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178764 is on microarray TOM1: SGN-S1-1-7.1.3.16
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C178764 [TUS-30-A2] | Trace: SGN-T1512 | EST: SGN-E378695 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C178764 [TUS-30-A2] | Trace: SGN-T184481 | EST: SGN-E371867 | Direction: 5' | Facility: INRA |
| Clone: SGN-C178764 [TUS-30-A2] | Trace: SGN-T184557 | EST: SGN-E371943 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E282814 | Length: 339 bp (903 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E282814 [] (trimmed)
CCAGCAAAGGTAACAAAAGTTTATTGCTTTAAAAAGGACCTCAGTTGGACTGTAAGTGATTAATATACAAACTGCATACATGGGAACCAACATGT
GCTGGATTTCTTTACAATATATAAGCATGAGAACATGTACTTGAAAGCAATTCATGGTTGGATTTTCTTCCCCTTTCACCTTTCTGAAGCTTGAT
ATTAGGGGCCTCTTAGTTTTTGTACTTCATGGTTTCCTTCTCAAACCCAATTGTAGGGAACTGCTTAGCATACTCCTCCACATCCTGACGGAGTT
TTGCAATTTCAGACTTGATTGGAGCACTGGATTCTAGTGTTGATACAAAGTCTT
GCTGGATTTCTTTACAATATATAAGCATGAGAACATGTACTTGAAAGCAATTCATGGTTGGATTTTCTTCCCCTTTCACCTTTCTGAAGCTTGAT
ATTAGGGGCCTCTTAGTTTTTGTACTTCATGGTTTCCTTCTCAAACCCAATTGTAGGGAACTGCTTAGCATACTCCTCCACATCCTGACGGAGTT
TTGCAATTTCAGACTTGATTGGAGCACTGGATTCTAGTGTTGATACAAAGTCTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E282814] | SGN-U577517 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T95334 [Download] [View] | Facility Assigned ID: TPRCF38THB |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.937 | Expected Error Rate: 0.0315 | Quality Trim Threshold: 14.5 |
Working
