EST details — SGN-C71216
| Search information |
| Request: 71216 | Match: SGN-C71216 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C71216 | Clone name: cLER-17-D3 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178855 is on microarray TOM1: SGN-S1-1-4.4.2.3
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C178855 [TUS-30-D21] | Trace: SGN-T184751 | EST: SGN-E372311 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178855 [TUS-30-D21] | Trace: SGN-T184752 | EST: SGN-E372312 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E283016 | Length: 502 bp (791 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E283016 [] (trimmed)
CTCTATTACCCATGGATTTATTTCTAATTGTTGTTACATTAGCTACCTCCTTTATTCTACTTTTCATTCTTCATAAACAATTTTACTCAGTTAAA
AAGCAGAGTAGTAATAGTACGAAAGGTACCTGAAGCTGGCGGAGCATGGACTATTATCGGCCATCTCCACCTTGTAGGTGGATCTGAATCTGATC
ACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAAGTTGTAGTTGTGAGTGAT
CACAAATTAGCAAAGGAGTGCTTGACAACTAACGATTTAGCCCTAGCAGGTCGGTCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGC
TATGTTTGGACTTTGGTCTTACGGTGCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGGTCGACGAATCGAGATGCTCA
AACACATCAGAGAATTTGAGGTAAAAT
AAGCAGAGTAGTAATAGTACGAAAGGTACCTGAAGCTGGCGGAGCATGGACTATTATCGGCCATCTCCACCTTGTAGGTGGATCTGAATCTGATC
ACTTGCCTCACAAAATGTTGGGCCGCTTGGCAGATAAGTACGGGCCTATTTTCGGAATGAAGCTTGGAGTTCATCAAGTTGTAGTTGTGAGTGAT
CACAAATTAGCAAAGGAGTGCTTGACAACTAACGATTTAGCCCTAGCAGGTCGGTCTAAATCAATGGCTTCAGAGATTATAGGCTACAAACATGC
TATGTTTGGACTTTGGTCTTACGGTGCGTACTGGAGAGAAACAAGGAAAATTGCCACAATTGAACTTTTCTCCGGTCGACGAATCGAGATGCTCA
AACACATCAGAGAATTTGAGGTAAAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E283016] | SGN-U564761 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T95867 [Download] [View] | Facility Assigned ID: TPRCO14TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0237 | Quality Trim Threshold: 14.5 |
Working
