EST details — SGN-C71401
Search information |
Request: 71401 | Match: SGN-C71401 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C71401 | Clone name: cLER-17-M1 |
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Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178909 is on microarray TOM1: SGN-S1-1-6.3.3.17
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C178909 [TUS-30-G3] | Trace: SGN-T184433 | EST: SGN-E371819 | Direction: 3' | Facility: INRA |
Clone: SGN-C178909 [TUS-30-G3] | Trace: SGN-T184434 | EST: SGN-E371820 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E283122 | Length: 447 bp (614 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E283122 [] (trimmed)
TTTCACCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACACAGGTAAGC
TATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCA
AGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCT
AGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGG
ACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAG
TATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCA
AGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCT
AGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGG
ACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAG
Unigenes |
Current Unigene builds | |||||
[SGN-E283122] | SGN-U584726 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T95973 [Download] [View] | Facility Assigned ID: TPRCM73TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.965 | Expected Error Rate: 0.0022 | Quality Trim Threshold: 14.5 |