EST details — SGN-C72246
| Search information |
| Request: 72246 | Match: SGN-C72246 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C72246 | Clone name: cLER-1-J3 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C185045 is on microarray TOM1: SGN-S1-1-6.2.11.1
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C185045 [TUS-46-F19] | Trace: SGN-T199031 | EST: SGN-E397705 | Direction: 3' | Facility: INRA |
| Clone: SGN-C185045 [TUS-46-F19] | Trace: SGN-T199032 | EST: SGN-E397706 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E280605 | Length: 464 bp (726 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E280605 [] (trimmed)
AAAATTCTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTG
TTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAGAAGGGGATGCTTTGTACGCCCTCCGCCG
GAGCTTATCTGACCCGGGTAACGTGTTACAGAGCTGGGATCCAAATCTTGTTAACCCTTGTACCTGGTTTCATGTCACTTGCAACGGAGATAATC
AAGTTACTCGTGTGGATCTTGGGAACTCAAAGTTATCTGGTCATTTGGTACCTGAGCTCGGAAAGCTTGAACATCTACAGTATCTGGAGCTTTAC
AAAAATAATATTCAGGGAACCATCCCTAAGGAGCTCGGTAACTTGAAGAGCCTTATTAGTCTGGATCTGTACAACAACAATATT
TTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAGAAGGGGATGCTTTGTACGCCCTCCGCCG
GAGCTTATCTGACCCGGGTAACGTGTTACAGAGCTGGGATCCAAATCTTGTTAACCCTTGTACCTGGTTTCATGTCACTTGCAACGGAGATAATC
AAGTTACTCGTGTGGATCTTGGGAACTCAAAGTTATCTGGTCATTTGGTACCTGAGCTCGGAAAGCTTGAACATCTACAGTATCTGGAGCTTTAC
AAAAATAATATTCAGGGAACCATCCCTAAGGAGCTCGGTAACTTGAAGAGCCTTATTAGTCTGGATCTGTACAACAACAATATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E280605] | SGN-U583216 | Tomato 200607 | Build 2 | 165 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T92159 [Download] [View] | Facility Assigned ID: TPRAC50TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.978 | Expected Error Rate: 0.0034 | Quality Trim Threshold: 14.5 |
Working
