EST details — SGN-C72345
| Search information |
| Request: 72345 | Match: SGN-C72345 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C72345 | Clone name: cLER-1-O17 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178668 is on microarray TOM1: SGN-S1-1-7.1.4.16
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C72345 [cLER-1-O17] | Trace: SGN-T92083 | EST: SGN-E280529 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C178668 [TUS-29-M2] | Trace: SGN-T184008 | EST: SGN-E371679 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178668 [TUS-29-M2] | Trace: SGN-T184009 | EST: SGN-E371680 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E280528 | Length: 452 bp (862 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E280528 [] (trimmed)
CAAAATTCATCTGTTTTCTCTACAAATTAGCAAATCTAAGCGAAACCCAGAAGGGATTTTAAGCTCAGAAAATGGAATCAGCTGCTAGAAGAAGT
GGTGGTGGTGTTCTTGAAGGATTTTACAGGCTGGTTATGCGCCGTACCCCTGTCTATGTTACCTTTGTCATCGCCGGCGCTTTGCTCGGCGAACG
GGCAGTGGATTATGGCGTTAAAACTCTCTGGGAGAAGAACAATGTTGGGAAGCGTTACGAGGATATTTCAGTTCTTGGACAGCGGCCTGTTGATG
AATAAATTTTCAGTAATGAAGTTTATTTGAGACGAGACAAAGTACTTGTTATCGATATTTCAATAATTGTTTTGCTAATCGCCATTGCTGGCTTT
CTTTTATATTTTTGCTGTAGTTTTGAAGGAAATTCATTGAATGAAATATGATACCAAATTGAAATTTTTGTC
GGTGGTGGTGTTCTTGAAGGATTTTACAGGCTGGTTATGCGCCGTACCCCTGTCTATGTTACCTTTGTCATCGCCGGCGCTTTGCTCGGCGAACG
GGCAGTGGATTATGGCGTTAAAACTCTCTGGGAGAAGAACAATGTTGGGAAGCGTTACGAGGATATTTCAGTTCTTGGACAGCGGCCTGTTGATG
AATAAATTTTCAGTAATGAAGTTTATTTGAGACGAGACAAAGTACTTGTTATCGATATTTCAATAATTGTTTTGCTAATCGCCATTGCTGGCTTT
CTTTTATATTTTTGCTGTAGTTTTGAAGGAAATTCATTGAATGAAATATGATACCAAATTGAAATTTTTGTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E280528] | SGN-U570518 | Tomato 200607 | Build 2 | 16 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T92082 [Download] [View] | Facility Assigned ID: TPRAA93TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.945 | Expected Error Rate: 0.0061 | Quality Trim Threshold: 12.5 |
Working
