EST details — SGN-C77160
Search information |
Request: 77160 | Match: SGN-C77160 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C77160 | Clone name: cLES-20-C14 |
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Library Name: cLES | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C184460 is on microarray TOM1: SGN-S1-1-7.2.16.8
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C184460 [TUS-44-N10] | Trace: SGN-T198443 | EST: SGN-E397117 | Direction: 3' | Facility: INRA |
Clone: SGN-C184460 [TUS-44-N10] | Trace: SGN-T200003 | EST: SGN-E398677 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E290525 | Length: 404 bp (1251 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E290525 [] (trimmed)
AGCTGGACCGGTGACAAACCTCGTCAAAAAAACGGTGAAGACATGGGTAATTTCTACTCAGCCGGTTTAGATCCGATTTTTTACTGCCACCATGC
CAATGTGGACAGGATGTGGAATGAATGGAAATTAATTGGCGGGAAAAGAAGGGATTTAACAGATAAAGATTGGTTGAACTCTGAATTCTTTTTCT
ACGATGAAAATCGTAACCCTTACCGTGTGAAAGTCCGTGACTGTTTGGACAGTAAAAAAATGGGATTCGATTACGCGCCAATGCCCACTCCATGG
CGTAATTTTAAACCAATCAGAAAGTCATCATCAGGAAAAGTGAATACAGCGTCTATTGCACCAGTTAGCAAGGTGTTGCCATTGGCGAAGCTGGA
CCGTGCGATTTCGTTCTCTATCAC
CAATGTGGACAGGATGTGGAATGAATGGAAATTAATTGGCGGGAAAAGAAGGGATTTAACAGATAAAGATTGGTTGAACTCTGAATTCTTTTTCT
ACGATGAAAATCGTAACCCTTACCGTGTGAAAGTCCGTGACTGTTTGGACAGTAAAAAAATGGGATTCGATTACGCGCCAATGCCCACTCCATGG
CGTAATTTTAAACCAATCAGAAAGTCATCATCAGGAAAAGTGAATACAGCGTCTATTGCACCAGTTAGCAAGGTGTTGCCATTGGCGAAGCTGGA
CCGTGCGATTTCGTTCTCTATCAC
Unigenes |
Current Unigene builds | |||||
[SGN-E290525] | SGN-U579941 | Tomato 200607 | Build 2 | 48 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T102204 [Download] [View] | Facility Assigned ID: TPSCZ19THB |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.973 | Expected Error Rate: 0.0081 | Quality Trim Threshold: 14.5 |