EST details — SGN-C80772
Search information |
Request: 80772 | Match: SGN-C80772 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C80772 | Clone name: cLET-13-F3 |
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Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C182147 is on microarray TOM1: SGN-S1-1-8.2.10.10
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C182147 [TUS-38-N1] | Trace: SGN-T194726 | EST: SGN-E393400 | Direction: 3' | Facility: INRA |
Clone: SGN-C182147 [TUS-38-N1] | Trace: SGN-T199331 | EST: SGN-E398005 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E293961 | Length: 438 bp (884 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E293961 [] (trimmed)
TTTCAAAAGTATATTACGAAGGGATATGTCTCTGAGACTGAATCTGGAAAGAGACTTGCTCAGGTTGTGAGTGATCCAAGCTTGACAAAATCAGG
TGTCTACTGGAGCTGGAACAAAGACTCAGCTTCTTTCGAAAACCAGTTGTCCGAAGAAGCAAGTGATGCAGAGAAAGCGCGTAAAGTGTGGGAAG
TCAGTGAGAAACTCGTTGGTTTGGCTTAAATTTTGAACTAACCTTAGTCATCGTCGATGAAAACAGGAAAAATGACTTCGCGAGTGAGAATTTGT
AACCGAAATTTCTAGGATGTTGTAAAGAGAAGTGTCATTGTAGTTAGGATTGAAAATAAAGATCACTCAACTTGTTTTGTTTTGTGTTTGGAAAA
TGTCACTAATTTGCCTTTGAAGTTAAATGAAGTGATGGTTCATGAGCATTGTTCAATT
TGTCTACTGGAGCTGGAACAAAGACTCAGCTTCTTTCGAAAACCAGTTGTCCGAAGAAGCAAGTGATGCAGAGAAAGCGCGTAAAGTGTGGGAAG
TCAGTGAGAAACTCGTTGGTTTGGCTTAAATTTTGAACTAACCTTAGTCATCGTCGATGAAAACAGGAAAAATGACTTCGCGAGTGAGAATTTGT
AACCGAAATTTCTAGGATGTTGTAAAGAGAAGTGTCATTGTAGTTAGGATTGAAAATAAAGATCACTCAACTTGTTTTGTTTTGTGTTTGGAAAA
TGTCACTAATTTGCCTTTGAAGTTAAATGAAGTGATGGTTCATGAGCATTGTTCAATT
Unigenes |
Current Unigene builds | |||||
[SGN-E293961] | SGN-U580321 | Tomato 200607 | Build 2 | 88 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T105804 [Download] [View] | Facility Assigned ID: TMEBY26TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.936 | Expected Error Rate: 0.0034 | Quality Trim Threshold: 12.5 |