EST details — SGN-C82254
| Search information |
| Request: 82254 | Match: SGN-C82254 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C82254 | Clone name: cLET-1-G17 |
| ||
| Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C179445 is on microarray TOM1: SGN-S1-1-6.1.2.14
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C82254 [cLET-1-G17] | Trace: SGN-T102565 | EST: SGN-E292291 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C179445 [TUS-31-M11] | Trace: SGN-T185154 | EST: SGN-E372697 | Direction: 3' | Facility: INRA |
| Clone: SGN-C179445 [TUS-31-M11] | Trace: SGN-T185155 | EST: SGN-E372698 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E292096 | Length: 630 bp (866 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E292096 [] (trimmed)
AAAAAAAAGCTCTTCAGAACAGAATCCAATGGCGTCAGAGAAGAAATTGAGCAACCCAATGAGGGATATCAAGGTTCAGAAGCTAGTCCTCAACA
TCTCTGTTGGTGAGAGCGGAGATAGACTTACCAGAGCGGCCAAGGTTTTGGAGCAACTAAGCGGTCAATCCCCTGTTTTCTCCAAAGCTAGGTAT
ACTGTGCGATCCTTCGGAATTAGGCGTAATGAGAAGATAGCTTGCTATGTCACCGTGAGAGGAGAGAAGGCTATGCAGCTCCTTGAGAGTGGATT
GAAAGTCAAGGAATACGAGTTGTTGAGAAGAAACTTCAGTGAGACTGGCTGCTTTGGTTTTGGTATCCAGGAGCACATCGATCTTGGAATTAAGT
ATGATCCTTCAACCGGTATCTACGGTATGGATTTCTATGTTGTTCTAGAGCGCCCAGGATACCGTGTTGCTCGTCGACGTAGGTGCAAGTCTCGA
GTTGGAATTCAACACAGGGTCACAAAAGAGGACTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAATCTTCAAACATTCA
GTAAGTTGGAATTTCCAGTGTTGGATCAATTTGTTTCCCCAACAAGTGTTATGTTTTTTA
TCTCTGTTGGTGAGAGCGGAGATAGACTTACCAGAGCGGCCAAGGTTTTGGAGCAACTAAGCGGTCAATCCCCTGTTTTCTCCAAAGCTAGGTAT
ACTGTGCGATCCTTCGGAATTAGGCGTAATGAGAAGATAGCTTGCTATGTCACCGTGAGAGGAGAGAAGGCTATGCAGCTCCTTGAGAGTGGATT
GAAAGTCAAGGAATACGAGTTGTTGAGAAGAAACTTCAGTGAGACTGGCTGCTTTGGTTTTGGTATCCAGGAGCACATCGATCTTGGAATTAAGT
ATGATCCTTCAACCGGTATCTACGGTATGGATTTCTATGTTGTTCTAGAGCGCCCAGGATACCGTGTTGCTCGTCGACGTAGGTGCAAGTCTCGA
GTTGGAATTCAACACAGGGTCACAAAAGAGGACTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAATCTTCAAACATTCA
GTAAGTTGGAATTTCCAGTGTTGGATCAATTTGTTTCCCCAACAAGTGTTATGTTTTTTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E292096] | SGN-U577566 | Tomato 200607 | Build 2 | 44 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T102370 [Download] [View] | Facility Assigned ID: TMEAA45THB |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.972 | Expected Error Rate: 0.0129 | Quality Trim Threshold: 12.5 |
Working
