EST details — SGN-C83249
Search information |
Request: 83249 | Match: SGN-C83249 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C83249 | Clone name: cLET-23-O14 |
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Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C184634 is on microarray TOM1: SGN-S1-1-1.1.14.12
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C184634 [TUS-45-E16] | Trace: SGN-T196546 | EST: SGN-E395220 | Direction: 3' | Facility: INRA |
Clone: SGN-C184634 [TUS-45-E16] | Trace: SGN-T196547 | EST: SGN-E395221 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E295383 | Length: 472 bp (970 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E295383 [] (trimmed)
TTCACAAGGAAGTTAATTTTGTCGCTTACCTACTAATTGTTCTTGGAATGTTTCTATATGTTGATGCCAAGGCTTGTACTAGAGAATGTGGTAAT
CTTGGGTTCGGGATATGCCCACGTTCAGAAGGAAGTCCGCTAAATCCCATATGCATCAATTGTTGCTCAGGCTATAAGGGTTGTAATTATTATAA
TTCTTTCGGAAAATTTATTTGTGAAGGAGAATCTGATCCAAAAAGGCCAAATGCTTGCACCTTTAATTGTGATCCAAATATTGCCTATTCAAGAT
GTCCCCGTTCACAAGGAAAATCGTTAATTTATCCCACCGGATGTACCACATGTTGCACAGGGTACAAGGGTTGCTATTATTTTGGTAAAGATGGA
AAGTTTGTATGTGAAGGAGAGAGTGATGAACCCAAGGCAAATATGTACCCTGTAATGTGACTCTAGACTTGTCCATCTTCTGGATTGCCCAA
CTTGGGTTCGGGATATGCCCACGTTCAGAAGGAAGTCCGCTAAATCCCATATGCATCAATTGTTGCTCAGGCTATAAGGGTTGTAATTATTATAA
TTCTTTCGGAAAATTTATTTGTGAAGGAGAATCTGATCCAAAAAGGCCAAATGCTTGCACCTTTAATTGTGATCCAAATATTGCCTATTCAAGAT
GTCCCCGTTCACAAGGAAAATCGTTAATTTATCCCACCGGATGTACCACATGTTGCACAGGGTACAAGGGTTGCTATTATTTTGGTAAAGATGGA
AAGTTTGTATGTGAAGGAGAGAGTGATGAACCCAAGGCAAATATGTACCCTGTAATGTGACTCTAGACTTGTCCATCTTCTGGATTGCCCAA
Unigenes |
Current Unigene builds | |||||
[SGN-E295383] | SGN-U578366 | Tomato 200607 | Build 2 | 209 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T108108 [Download] [View] | Facility Assigned ID: TMEDL91TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.963 | Expected Error Rate: 0.0088 | Quality Trim Threshold: 12.5 |