EST details — SGN-C87600
Search information |
Request: 87600 | Match: SGN-C87600 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C87600 | Clone name: cLET-5-E13 |
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Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C183523 is on microarray TOM1: SGN-S1-1-8.3.1.3
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C183523 [TUS-42-G9] | Trace: SGN-T195485 | EST: SGN-E394159 | Direction: 3' | Facility: INRA |
Clone: SGN-C183523 [TUS-42-G9] | Trace: SGN-T195950 | EST: SGN-E399151 | Direction: 3' | Facility: INRA |
Clone: SGN-C183523 [TUS-42-G9] | Trace: SGN-T200449 | EST: SGN-E399557 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E290166 | Length: 479 bp (836 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E290166 [] (trimmed)
GGTTTTTTCTTTGTAATATAATTTTCATTCTCAAACGAAATCCAATATGCAGCGAAGTGCTGAACGAATCGCCACCATCTCAGCCCATCTTAACC
CTTCTCCTTCTTCTCACCAGATGGAGGGATTGAGTGCAGCTAATTGCAGGGCGAAAGGGGGTTCTCCGGGGTTCAAAGTTGCGATCTTGGGTGCT
GCAGGAGGTATTGGTCAGCCACTTGCAATGCTTATGAAGATGAATCCTTTGGTTTCGGTTCTGCATCTTTATGATGTTGCAAATACCCCTGGTGT
AACTGCTGATATTAGCCACATGGATACTGGTGCTGTGGTTCGTGGTTTTCTAGGACCTCAACAATTAGAAGATGCTCTCACTGGCATGGACCTCG
TAATAATCCCTGCTGGTGTTCCTAGAAAACCAGGCATGACAAGAGATGATCTTTTCAACATAAATGCAGGAATCGTGAAGACTTTATGTGAAGGA
ATTG
CTTCTCCTTCTTCTCACCAGATGGAGGGATTGAGTGCAGCTAATTGCAGGGCGAAAGGGGGTTCTCCGGGGTTCAAAGTTGCGATCTTGGGTGCT
GCAGGAGGTATTGGTCAGCCACTTGCAATGCTTATGAAGATGAATCCTTTGGTTTCGGTTCTGCATCTTTATGATGTTGCAAATACCCCTGGTGT
AACTGCTGATATTAGCCACATGGATACTGGTGCTGTGGTTCGTGGTTTTCTAGGACCTCAACAATTAGAAGATGCTCTCACTGGCATGGACCTCG
TAATAATCCCTGCTGGTGTTCCTAGAAAACCAGGCATGACAAGAGATGATCTTTTCAACATAAATGCAGGAATCGTGAAGACTTTATGTGAAGGA
ATTG
Unigenes |
Current Unigene builds | |||||
[SGN-E290166] | SGN-U574918 | Tomato 200607 | Build 2 | 35 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T103614 [Download] [View] | Facility Assigned ID: TMEAQ31TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.976 | Expected Error Rate: 0.0071 | Quality Trim Threshold: 14.5 |