| arabidopsis/peptide [blastx] | Showing best 5 hits recorded |
| Match: At5G44500.2 |
score: 127 |
e-value: 1e-29 |
Identity: 81.51% |
Span: 348bp (46.2%) |
Frame: 3 |
| small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative | chr5:1... |
| Match: At5G44500.1 |
score: 127 |
e-value: 1e-29 |
Identity: 81.51% |
Span: 348bp (46.2%) |
Frame: 3 |
| small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative | chr5:1... |
| Match: At4G20440.2 |
score: 126 |
e-value: 2e-29 |
Identity: 83.9% |
Span: 348bp (46.2%) |
Frame: 3 |
| Symbols: SMB | SMB | chr4:11022854-11023627 REVERSE |
| Match: At4G20440.1 |
score: 126 |
e-value: 2e-29 |
Identity: 83.9% |
Span: 348bp (46.2%) |
Frame: 3 |
| Symbols: SMB | SMB | chr4:11022854-11023627 REVERSE |
| Match: At4G20440.3 |
score: 126 |
e-value: 2e-29 |
Identity: 83.9% |
Span: 348bp (46.2%) |
Frame: 3 |
| Symbols: SMB | SMB | chr4:11022854-11023627 REVERSE |
|
| 6 lower scoring hits censored -- only 5 best hits are stored. |
| genbank/nr [blastx] | Showing best 89 hits recorded |
| Match: gi|51970288|dbj|BAD43836.1| |
score: 127 |
e-value: 8e-28 |
Identity: 81.51% |
Span: 348bp (46.2%) |
Frame: 3 |
| unknown protein [Arabidopsis thaliana] |
| Match: gi|21536707|gb|AAM61039.1| |
score: 127 |
e-value: 6e-28 |
Identity: 80.67% |
Span: 348bp (46.2%) |
Frame: 3 |
| putative snRNP protein [Arabidopsis thaliana] |
| Match: gi|79329893|ref|NP_001032011.1| |
score: 127 |
e-value: 8e-28 |
Identity: 81.51% |
Span: 348bp (46.2%) |
Frame: 3 |
| unknown |
| Match: gi|30685110|ref|NP_849414.1| |
score: 126 |
e-value: 2e-27 |
Identity: 83.9% |
Span: 348bp (46.2%) |
Frame: 3 |
| SMB |
| Match: gi|50934399|ref|XP_476727.1| |
score: 125 |
e-value: 4e-27 |
Identity: 80.85% |
Span: 276bp (36.6%) |
Frame: 3 |
| putative |
| Match: gi|91082993|ref|XP_974329.1| |
score: 92.8 |
e-value: 2e-17 |
Identity: 58.7% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: similar to Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) [Tri... |
| Match: gi|110777573|ref|XP_392871.3| |
score: 89 |
e-value: 3e-16 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|72169980|ref|XP_786252.1| |
score: 88.2 |
e-value: 5e-16 |
Identity: 60% |
Span: 270bp (35.8%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|72051549|ref|XP_788645.1| |
score: 88.2 |
e-value: 5e-16 |
Identity: 60% |
Span: 270bp (35.8%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|3880616|emb|CAB07132.1| |
score: 86.3 |
e-value: 2e-15 |
Identity: 53.85% |
Span: 270bp (35.8%) |
Frame: 3 |
| Hypothetical |
| Match: gi|39582947|emb|CAE73012.1| |
score: 85.9 |
e-value: 3e-15 |
Identity: 53.85% |
Span: 270bp (35.8%) |
Frame: 3 |
| gi|39582947|emb|CAE73012.1| Hypothetical protein CBG20368 [Caenorhabditis briggsae] |
| Match: gi|94469378|gb|ABF18538.1| |
score: 85.1 |
e-value: 4e-15 |
Identity: 58.02% |
Span: 243bp (32.2%) |
Frame: 3 |
| U1 |
| Match: gi|41351028|gb|AAH65601.1| |
score: 85.1 |
e-value: 4e-15 |
Identity: 57.61% |
Span: 276bp (36.6%) |
Frame: 3 |
| Zgc:77315 |
| Match: gi|87248407|gb|ABD36256.1| |
score: 85.1 |
e-value: 4e-15 |
Identity: 60% |
Span: 240bp (31.8%) |
Frame: 3 |
| small |
| Match: gi|55238326|gb|EAA11463.2| |
score: 84.7 |
e-value: 6e-15 |
Identity: 56.79% |
Span: 243bp (32.2%) |
Frame: 3 |
| ENSANGP00000007148 |
| Match: gi|53690154|gb|AAU89981.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| small |
| Match: gi|4507125|ref|NP_003082.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|4507125|ref|NP_003082.1| small nuclear ribonucleoprotein polypeptide B/B' isoform B; Sm protein B/B'; small nuclea... |
| Match: gi|337461|gb|AAA36579.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|337461|gb|AAA36579.1| small nuclear ribonucleoprotein particle (SmB') |
| Match: gi|190247|gb|AAA60151.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|190247|gb|AAA60151.1| snRNP polypeptide B |
| Match: gi|86438323|gb|AAI12635.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| Unknown |
| Match: gi|61552980|gb|AAX46330.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| small |
| Match: gi|55650590|ref|XP_525246.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|55653900|ref|XP_525398.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|6678053|ref|NP_033251.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|6678053|ref|NP_033251.1| small nuclear ribonucleoprotein B [Mus musculus] gi|134038|sp|P27048|RSMB_MOUSE Small nuc... |
| Match: gi|38150007|ref|NP_937859.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|38150007|ref|NP_937859.1| small nuclear ribonucleoprotein polypeptide B/B' isoform B'; Sm protein B/B'; small nucl... |
| Match: gi|7208221|gb|AAF40115.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|7208221|gb|AAF40115.1| small nuclear ribonucleoprotein B' [Macropus eugenii] |
| Match: gi|5870111|gb|AAD54481.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| small |
| Match: gi|109092660|ref|XP_001113926.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|337459|gb|AAA36578.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|337459|gb|AAA36578.1| small nuclear ribonucleoprotein particle (SmB) |
| Match: gi|83318209|gb|AAI08498.1| |
score: 84.3 |
e-value: 8e-15 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| Unknown |
| Match: gi|54645493|gb|EAL34232.1| |
score: 84 |
e-value: 1e-14 |
Identity: 52.17% |
Span: 276bp (36.6%) |
Frame: 3 |
| GA18820-PA |
| Match: gi|5870130|gb|AAD54489.1| |
score: 84 |
e-value: 1e-14 |
Identity: 62.65% |
Span: 249bp (33.0%) |
Frame: 3 |
| gi|5870130|gb|AAD54489.1| small nuclear ribonucleoprotein B' [Homo sapiens] |
| Match: gi|16769000|gb|AAL28719.1| |
score: 84 |
e-value: 1e-14 |
Identity: 52.17% |
Span: 276bp (36.6%) |
Frame: 3 |
| LD14049p |
| Match: gi|45382973|ref|NP_989930.1| |
score: 84 |
e-value: 1e-14 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| small nuclear ribonucleoprotein-associated protein B' [Gallus gallus] >gi10720263|sp|Q9PV94.1|RSMB_CHICK RecName: Ful... |
| Match: gi|3142634|gb|AAC78612.1| |
score: 84 |
e-value: 1e-14 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|3142634|gb|AAC78612.1| small nuclear ribonucleoprotein N [Mus musculus] |
| Match: gi|38048415|gb|AAR10110.1| |
score: 84 |
e-value: 1e-14 |
Identity: 52.17% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|38048415|gb|AAR10110.1| similar to Drosophila melanogaster SmB [Drosophila yakuba] |
| Match: gi|5870129|gb|AAD54488.1| |
score: 84 |
e-value: 1e-14 |
Identity: 62.65% |
Span: 249bp (33.0%) |
Frame: 3 |
| gi|5870129|gb|AAD54488.1| small nuclear ribonucleoprotein B [Homo sapiens] |
| Match: gi|47575712|ref|NP_001001198.1| |
score: 83.6 |
e-value: 1e-14 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|47575712|ref|NP_001001198.1| hypothetical protein MGC76201 [Xenopus tropicalis] >gi|45501101|gb|AAH67325.1| Hypoth... |
| Match: gi|57045593|ref|XP_536165.1| |
score: 83.6 |
e-value: 1e-14 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|4507135|ref|NP_003088.1| |
score: 83.6 |
e-value: 1e-14 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|4507135|ref|NP_003088.1| small nuclear ribonucleoprotein polypeptide N; SM protein N; tissue-specific splicing pro... |
| Match: gi|109080356|ref|XP_001107037.1| |
score: 83.6 |
e-value: 1e-14 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|109080392|ref|XP_001106837.1| |
score: 83.6 |
e-value: 1e-14 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|109659180|gb|AAI18261.1| |
score: 83.6 |
e-value: 1e-14 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| Unknown |
| Match: gi|73950978|ref|XP_856146.1| |
score: 83.6 |
e-value: 1e-14 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|6730236|pdb|1D3B|L |
score: 83.2 |
e-value: 2e-14 |
Identity: 63.75% |
Span: 240bp (31.8%) |
Frame: 3 |
| Chain |
| Match: gi|39972919|ref|XP_367850.1| |
score: 82.8 |
e-value: 2e-14 |
Identity: 50% |
Span: 270bp (35.8%) |
Frame: 3 |
| hypothetical |
| Match: gi|206694|gb|AAA42059.1| |
score: 82.4 |
e-value: 3e-14 |
Identity: 63.75% |
Span: 240bp (31.8%) |
Frame: 3 |
| snRNP-associated |
| Match: gi|27371057|gb|AAH41275.1| |
score: 82 |
e-value: 4e-14 |
Identity: 55.43% |
Span: 276bp (36.6%) |
Frame: 3 |
| gi|27371057|gb|AAH41275.1| Snrpn-prov protein [Xenopus laevis] |
| Match: gi|62896825|dbj|BAD96353.1| |
score: 82 |
e-value: 4e-14 |
Identity: 56.52% |
Span: 276bp (36.6%) |
Frame: 3 |
| small |
| Match: gi|42733657|gb|AAO50828.2| |
score: 81.6 |
e-value: 5e-14 |
Identity: 59.09% |
Span: 264bp (35.0%) |
Frame: 3 |
| gi|42733657|gb|AAO50828.2| similar to Arabidopsis thaliana (Mouse-ear cress). Similarity to small nuclear ribonucleop... |
| Match: gi|66823569|ref|XP_645139.1| |
score: 81.6 |
e-value: 5e-14 |
Identity: 59.09% |
Span: 264bp (35.0%) |
Frame: 3 |
| putative |
| Match: gi|77020260|ref|NP_001029144.1| |
score: 80.9 |
e-value: 8e-14 |
Identity: 55.43% |
Span: 276bp (36.6%) |
Frame: 3 |
| small |
| Match: gi|47211209|emb|CAF90166.1| |
score: 80.9 |
e-value: 8e-14 |
Identity: 62.5% |
Span: 240bp (31.8%) |
Frame: 3 |
| gi|47211209|emb|CAF90166.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|109505083|ref|XP_001067879.1| |
score: 80.1 |
e-value: 1e-13 |
Identity: 62.5% |
Span: 240bp (31.8%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|56759110|gb|AAW27695.1| |
score: 80.1 |
e-value: 1e-13 |
Identity: 57.32% |
Span: 243bp (32.2%) |
Frame: 3 |
| SJCHGC06652 |
| Match: gi|73957440|ref|XP_546848.2| |
score: 78.6 |
e-value: 4e-13 |
Identity: 57.5% |
Span: 240bp (31.8%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|85119473|ref|XP_965639.1| |
score: 77.4 |
e-value: 9e-13 |
Identity: 48.08% |
Span: 270bp (35.8%) |
Frame: 3 |
| hypothetical |
| Match: gi|73978176|ref|XP_854527.1| |
score: 75.9 |
e-value: 3e-12 |
Identity: 54.35% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|111067640|gb|EAT88760.1| |
score: 75.5 |
e-value: 4e-12 |
Identity: 50.52% |
Span: 267bp (35.4%) |
Frame: 3 |
| hypothetical |
| Match: gi|89286141|gb|EAR84144.1| |
score: 73.9 |
e-value: 1e-11 |
Identity: 47.78% |
Span: 270bp (35.8%) |
Frame: 3 |
| Sm |
| Match: gi|88185425|gb|EAQ92893.1| |
score: 73.9 |
e-value: 1e-11 |
Identity: 46.6% |
Span: 270bp (35.8%) |
Frame: 3 |
| hypothetical |
| Match: gi|90298751|gb|EAS28382.1| |
score: 73.9 |
e-value: 1e-11 |
Identity: 52.58% |
Span: 264bp (35.0%) |
Frame: 3 |
| hypothetical |
| Match: gi|46108400|ref|XP_381258.1| |
score: 72.8 |
e-value: 2e-11 |
Identity: 48.54% |
Span: 270bp (35.8%) |
Frame: 3 |
| gi|46108400|ref|XP_381258.1| hypothetical protein FG01082.1 [Gibberella zeae PH-1] >gi|42545066|gb|EAA67909.1| hypoth... |
| Match: gi|83769163|dbj|BAE59300.1| |
score: 72 |
e-value: 4e-11 |
Identity: 52.87% |
Span: 237bp (31.4%) |
Frame: 3 |
| unnamed |
| Match: gi|67531296|ref|XP_662080.1| |
score: 72 |
e-value: 4e-11 |
Identity: 55.29% |
Span: 237bp (31.4%) |
Frame: 3 |
| hypothetical |
| Match: gi|109475044|ref|XP_345547.2| |
score: 70.5 |
e-value: 1e-10 |
Identity: 50% |
Span: 276bp (36.6%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|70994546|ref|XP_752051.1| |
score: 70.1 |
e-value: 1e-10 |
Identity: 50.57% |
Span: 237bp (31.4%) |
Frame: 3 |
| small |
| Match: gi|134545|sp|P17136|RSMB_RAT |
score: 68.9 |
e-value: 3e-10 |
Identity: 53.66% |
Span: 246bp (32.6%) |
Frame: 3 |
| gi|134545|sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (Sm... |
| Match: gi|67623475|ref|XP_668020.1| |
score: 67 |
e-value: 1e-09 |
Identity: 65.85% |
Span: 123bp (16.3%) |
Frame: 3 |
| small |
| Match: gi|36495|emb|CAA34288.1| |
score: 67 |
e-value: 1e-09 |
Identity: 55.7% |
Span: 237bp (31.4%) |
Frame: 3 |
| gi|36495|emb|CAA34288.1| SmB /B' autoimmune antigene [Homo sapiens] |
| Match: gi|7208223|gb|AAF40116.1| |
score: 65.5 |
e-value: 4e-09 |
Identity: 61.7% |
Span: 141bp (18.7%) |
Frame: 3 |
| gi|7208223|gb|AAF40116.1| truncated small nuclear ribonucleoprotein B' [Macropus eugenii] |
| Match: gi|50550683|ref|XP_502814.1| |
score: 64.7 |
e-value: 6e-09 |
Identity: 48.35% |
Span: 231bp (30.6%) |
Frame: 3 |
| hypothetical |
| Match: gi|57229488|gb|AAW45921.1| |
score: 64.7 |
e-value: 6e-09 |
Identity: 36.9% |
Span: 225bp (29.8%) |
Frame: 3 |
| conserved |
| Match: gi|53733498|gb|AAH83694.1| |
score: 64.7 |
e-value: 6e-09 |
Identity: 66.67% |
Span: 126bp (16.7%) |
Frame: 3 |
| Snrpb |
| Match: gi|74136537|ref|NP_001028167.1| |
score: 62.4 |
e-value: 3e-08 |
Identity: 59.57% |
Span: 141bp (18.7%) |
Frame: 3 |
| small |
| Match: gi|71019611|ref|XP_760036.1| |
score: 61.2 |
e-value: 7e-08 |
Identity: 32.46% |
Span: 249bp (33.0%) |
Frame: 3 |
| hypothetical |
| Match: gi|109476675|ref|XP_001068469.1| |
score: 61.2 |
e-value: 7e-08 |
Identity: 61.36% |
Span: 132bp (17.5%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|109501939|ref|XP_001081245.1| |
score: 58.9 |
e-value: 3e-07 |
Identity: 47.5% |
Span: 240bp (31.8%) |
Frame: 3 |
| PREDICTED: |
| Match: gi|1177355|emb|CAA93231.1| |
score: 57.8 |
e-value: 8e-07 |
Identity: 46.25% |
Span: 237bp (31.4%) |
Frame: 3 |
| SPAC26A3.08 |
| Match: gi|23497211|gb|AAN36758.1| |
score: 56.6 |
e-value: 2e-06 |
Identity: 52.17% |
Span: 138bp (18.3%) |
Frame: 3 |
| ribonucleoprotein, |
| Match: gi|49652787|emb|CAG85115.1| |
score: 56.2 |
e-value: 2e-06 |
Identity: 40.23% |
Span: 240bp (31.8%) |
Frame: 3 |
| unnamed |
| Match: gi|41107641|gb|AAH65369.1| |
score: 54.7 |
e-value: 6e-06 |
Identity: 54.76% |
Span: 126bp (16.7%) |
Frame: 3 |
| gi|41107641|gb|AAH65369.1| Unknown (protein for MGC:71285) [Homo sapiens] |
| Match: gi|6320867|ref|NP_010946.1| |
score: 54.7 |
e-value: 6e-06 |
Identity: 54.72% |
Span: 138bp (18.3%) |
Frame: 3 |
| gi|6320867|ref|NP_010946.1| associated with U1, U2, U4, and U5 snRNPs as part of the Sm-core that is common to all sp... |
| Match: gi|70937084|ref|XP_739397.1| |
score: 54.3 |
e-value: 8e-06 |
Identity: 55% |
Span: 120bp (15.9%) |
Frame: 3 |
| ribonucleoprotein |
| Match: gi|65302518|emb|CAI74625.1| |
score: 54.3 |
e-value: 8e-06 |
Identity: 55.26% |
Span: 114bp (15.1%) |
Frame: 3 |
| small |
| Match: gi|68064661|ref|XP_674314.1| |
score: 54.3 |
e-value: 8e-06 |
Identity: 55% |
Span: 120bp (15.9%) |
Frame: 3 |
| ribonucleoprotein |
| Match: gi|71030572|ref|XP_764928.1| |
score: 53.1 |
e-value: 2e-05 |
Identity: 52.63% |
Span: 114bp (15.1%) |
Frame: 3 |
| small |
| Match: gi|49524589|emb|CAG58191.1| |
score: 52.4 |
e-value: 3e-05 |
Identity: 61.54% |
Span: 117bp (15.5%) |
Frame: 3 |
| unnamed |
| Match: gi|50303233|ref|XP_451558.1| |
score: 50.8 |
e-value: 9e-05 |
Identity: 62.16% |
Span: 111bp (14.7%) |
Frame: 3 |
| unnamed |
|
| 23 lower scoring hits censored -- only 89 best hits are stored. |
