Sol Genomics Network

Unigene SGN-U196129

Unigene Basic Information

Unigene ID:	SGN-U196129
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	196129
mRNA sequence:	Length: 2230 bp

>SGN-U196129 Capsicum annuum #1 (24 members)
GGATCCCCTTCTTGGTGATGTCCAAGTTTATCCTGAGAAAGGTACCGTTGCTTTCTCTGCTGGATTGCATGGTTGGGCTTTCACTCTCAC
CAATTTTGCCAAGATGTACGCTTCCAAATTTGGTGTTGATGAGTCTAAGATGATGGAAAGACTCTGGGGCGAGAACTTTTTTGACCCTGC
CACCAAAAAGTGGACCACCAAAAACACTGGAACAGCTTCATGCAAGCGTGGGTTTGTTCAGTTCTGCTATGAGCCCATCAAGCAGATTAT
TAACACTTGCATGAATGATCAGAAAGATAAACTCTGGCCAATGTTGCAGAAGCTTGGTGTAACCATGAAATCTGATGAAAAAGATTTGAT
GGGCAAGGCACTGATGAAGCGTGTGATGCAGACCTGGCTTCCCGCAAGTACTGCTCTTCTGGAAATGATGATATACCATCTTCCATCTCC
TTCCACAGCTCAAAAATATCGTGTGGAGAACCTCTACGAGGGACCTCTTGATGATGCGTATGCCAATGCCATCAGGAACTGTGACCCAGA
AGGGCCGCTTATGCTTTATGTATCCAAGATGATTCCAGCATCTGACAAGGGTAGATTCTTTGCTTTTGGTCGTGTATTCGCTGGGAAGGT
TAGTACTGGTATGAAGGTTAGAATCATGGGTCCCAACTATGTTCCTGGTGAAAAGAAGGATTTATATGTTAAGAATATCCAGAGAACTGT
TATTTGGATGGGTAAGAGGCAAGAAACTGTTGAGGATGTACCCTGTGGTAACACTGTTGCCATGGTCGGTTTAGATCAATTTATTACCAA
GAACGCAACATTGACTAATGAAAAGGAAGTTGATGCCCACCCAATTAGAGCAATGAAGTTTTCTGTATCACCAGTCGTGCGTGTAGCTGT
TCAGTGCAAGGTTGCATCTGACCTTCCCAAGCTTGTTGAAGGGTTGAAGCGTTTGGCTAAGTCTGATCCTATGGTGGTTTGTTCTATTGA
AGAGTCTGGAGAGCATATCATTGCTGGTGCTGGAGAACTCCACCTTGAGATCTGCCTGAAGGACTTGCAGGATGACTTCATGGGTGGTGC
TGAAATTATAAAATCTGATCCTGTTGTGTCCTTCCGTGAGACTGTTCTCGAGAAGTCTTGTCGGACAGTGATGAGCAAGTCTCCTAACAA
GCACAACCGTTTGTACATGGAAGCTAGACCAATGGAAGAAGGCCTTGCAGAGGCTATTGACGAGGGGCGCATTGGCCCAAGGGATGATCC
TAAAGTTCGATCCAAGATCTTGGCGGAGGAGTTTGGTTGGGACAAAGATCTTGCAAAGAAAATTTGGTGCTTTGGGCCAGAGACAACTGG
CCCAAACATGGTGGTGGATATGTGTAAGGGAGTTCAGTACCTGAATGAAATTAAGGATTCTGTTGTTGCTGGTTTCCAGTGGGCTTCGAA
GGAAGGTGCTCTGGCTGAAGAGAACATGAGAGGTATTTGTTTTGAAGTCTGTGATGTTGTGCTTCATGCTGATGCTATTCACAGGGGTGG
TGGCCAAGTTATTCCCACTGCGAGAAGGGTTATCTATGCTTCTCAGCTTACTGCCAAACCCCGCCTGTTGGAACCCGTTTACCTTGTGGA
GATTCAGGCTCCAGAGCAAGCTCTTGGTGGCATCTATAGTGTTCTGAACCAGAAGCGTGGACATGTGTTCGAGGAGATGCAGAGGCCAGG
AACCCCTCTTTACAACATCAAGGCTTACCTTCCTGTCGTTGAGTCATTTGGATTTTCAGGTACCTTGAGAGCTGCTACTTCAGGTCAAGC
TTTCCCACAATGCGTGTTCGATCATTGGGACATGATGTCATCCGACCCACTGGAAGCTGGTACACAAGCTCATCAACTCGTCCTTGATAT
CCGCAAGAGGAAGGGTTTGAAGGAGCAGATGACCCCTCTATCAGAGTTCGAGGACAAGCTGTAAGCTTGTGGAAGTTTCAACTTGGCAGA
GGTTTTTGATGGATACTTGCTTAATTGGATCTGCATTAGTTTTGTTTTACATTATGTGTTTGGGCCGTACTTTTTATACTTTTTACCATT
TTCCAGGTAGAAGTTTGAACCTTAAGTGAGATATTGCTTTTGTCAGTTACAAAGATGAGAATCTTGCTGTTGTGTTGTTTTTGAAAGTGT
TTTAGTTCTTCTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AY480021	elongation factor 2

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	6
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	9
Capsicum annuum	KS10	Hairy root	2179	1
Capsicum annuum	KS11	Early root	2168	5
Capsicum annuum	KS12	Placenta	4279	3

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	22401	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	31
5	56963	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	19
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118816	Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	28
5	129589	Elongation factor G III and V Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	18

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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