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Unigene SGN-U200613

Unigene Basic Information

Unigene ID:	SGN-U200613
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200613
mRNA sequence:	Length: 321 bp

>SGN-U200613 Capsicum annuum #1 (1 members)
CTTTACTGGAGTAAATCATCACGGACAACCTGTTCTCTTTGGATGTGCTTTCCTAATAAATGAATCAGAAGCCTCATTCATATGGCTTTT
TAAGACATGGCTTGCAGCTATGTCTGGTCAACCCCCCTTGTCCATGACAACAGATCACGATGCTGTTATTAGTTCTGCCATCATGCAGGT
TTTCCCTGAGACCCGTCACCGTTTCTGCAAATGGCACATCTTCAAGAAATGCCAGGAAAAGTTGTCACATGTCTTCCTTGAGCACCCAAA
TTTTGAAGCAGACTCCCACAAGTGTGTAAATTTAACAGACTCTACTGAGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E506787
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At4g38180 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15233732\|ref\|NP_195531.1\|	196.1	9.7e-50	80.19	318 bp (99.1%)	2
Description:	FRS5 (FAR1-related sequence 5); zinc ion binding [Arabidopsis thaliana] >gi75213627\|sp\|Q9SZL8.1…
arabidopsis	blastx	At4g38180.1	196.1	2.5e-51	80.19	318 bp (99.1%)	2
Description:	At4g38180.1 68411.m04906 expressed protein
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35145 (107 Aa)

FTGVNHHGQPVLFGCAFLINESEASFIWLFKTWLAAMSGQPPLSMTTDHDAVISSAIMQVFPETRHRFCKWHIFKKCQEKLSHVFLEHPN
FEADSHKCVNLTDSTEX

SignalP predicts non-secretion with a score of 0.275

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P154654 (106 Aa)

FTGVNHHGQPVLFGCAFLINESEASFIWLFKTWLAAMSGQPPLSMTTDHDAVISSAIMQVFPETRHRFCKWHIFKKCQEKLSHVFLEHPN
FEADSHKCVNLTDSTE

SignalP predicts non-secretion with a score of 0.275

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	173	FAR1	80
2	22113	FAR1	62
5	56509	Znf_SWIM	35
1.1	101581	FAR1	69
2	118586	FAR1	48
5	129241	Zinc finger PMZ-type - Molecular Function: zinc ion binding (GO:0008270) FAR1 Zinc finger SWIM-type - Molecular Function: zinc ion binding (GO:0008270)	29

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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