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Unigene SGN-U201830

Unigene Basic Information

Unigene ID:	SGN-U201830
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201830
mRNA sequence:	Length: 287 bp

>SGN-U201830 Capsicum annuum #1 (1 members)
ATGTACAAATGCCACTAGTGTTGATGTTGAAGAGCACCTTTATAGGCTTGCTAAGGATGCTGGCATTACTGTTGTTACATCCTCACAGCG
CCCTGCTTTAATACCTTTCCATTCTCTGGAATTACCGTTGATTGATGGGGAAGGCAAGTGGCAGCTCCGTTCAATTAAGATTGATGAGGA
GGAAGGCGAATCAAATGAATATACCCAACAATTGGGACTATGATAATGTATTCCAATGTTGTGAAAACCTTCATGGATGGGCATAGAGGG
CAATAATTAATGAATTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
[Hide Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At4g39850 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18478510\|dbj\|BAB84550.1\|	97.44	4.9e-20	80.36	168 bp (58.5%)	2
Description:	peroxisomal ABC transporter [Arabidopsis thaliana] >gi18478515\|dbj\|BAB84551.1\| peroxisomal ABC …
arabidopsis	blastx	At4g39850.1	97.44	1.3e-21	80.36	168 bp (58.5%)	2
Description:	At4g39850.1 68411.m05134 peroxisomal ABC transporter PXA1 identical to peroxisomal ABC transpor…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36321 (73 Aa)

CTNATSVDVEEHLYRLAKDAGITVVTSSQRPALIPFHSLELPLIDGEGKWQLRSIKIDEEEGESNEYTQQLGL

SignalP predicts non-secretion with a score of 0.04

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P155896 (78 Aa)

LLPSMPIHEGFHNIGIHYHSPNCWVYSFDSPSSSSILIERSCHLPSPSINGNSREWKGIKAGRCEDVTTVMPASLASL

SignalP predicts non-secretion with a score of 0.055

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	16	ThiQ_ABC_transpt ABC_transporter Sulph_transpt1 CbiN_ATP	404
2	25341	ChvA ThiQ_ABC_transpt NtrCD ATP_GTP_A_BS Drr_ABC_transpt ABC_transporter Ag_transporter2 CcmA ProV FA_transporter IISP Cyc_pep_transpt Sulph_transpt1 ABC_TM_transpt DNA_hel_RepA AAA_ATPase_centr ABC_bact_transpt Sp/ptABC_transpt CbiN_ATP ABC_transptNodI	6
5	62531		3
1.1	101386	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	388
2	125269		3
5	135714		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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