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Unigene SGN-U204503

Unigene Basic Information

Unigene ID:	SGN-U204503
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204503
mRNA sequence:	Length: 286 bp

>SGN-U204503 Capsicum annuum #1 (1 members)
TCGACTGAGGCCTCAATTTCATCTTCTAGATCGGAAAATGACGTCATCATCTCCGATCACTATGATGATGATGAAGTTAAACCACTGCTC
TCCGTCGCCGCCGTATACCACCGTCGCAGCTCGTCGGCTCCTACCACCGCTTATTGGGCCCCACCAAATTCAGTTGCGTTCCTCTCTGGG
TCCCACCCTTCACAACTCCCCATCTTTTTCCGCTAGAGCCATCATGGCTCGTTCAGCGTCTTCCTCTTCCTCCTTCGTAATCACTGCTGC
AATGGCTAGTGAAGCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
[Hide Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38908 (95 Aa)

STEASISSSRSENDVIISDHYDDDEVKPLLSVAAVYHRRSSSAPTTAYWAPPNSVASSLGPTLHNSPSFSARAIMARSASSSSSFVITAA
MASEA

SignalP predicts non-secretion with a score of 0.026

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158632 (95 Aa)

RLRPQFHLLDRKMTSSSPITMMMMKLNHCSPSPPYTTVAARRLLPPLIGPHQIQLRSSLGPTLHNSPSFSARAIMARSASSSSSFVITAA
MASEA

SignalP predicts non-secretion with a score of 0.097

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	986	THF_Dhg_Cyh	19
2	38754		1
5	76504		1
1.1	102350	Tetrahydrofolate dehydrogenase/cyclohydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: folic acid and derivative biosynthesis (GO:0009396)	16

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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