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Unigene SGN-U205218

Unigene Basic Information

Unigene ID:	SGN-U205218
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	205218
mRNA sequence:	Length: 314 bp

>SGN-U205218 Capsicum annuum #1 (1 members)
CAAAGCCCATCATCTCCTTAGTAGCGGGTCAAACAAAAACCGAAGTCCAAATCATAAATCCCTAAAATTCTACCAAACCCTAATTTCTTC
TTCTTCCTCCTCCTCCTATTACTATTAATCTCTGAAAAAGTTGAAATCTTTTCAAAGAAAAATAAACTCATAATTATTGCTTCAGTGTAA
CAAATCAATAATCGTAGAAATGTCATCCTTCAAAAATGCAATACCAAGACGAGCTCATAAAGAGCGAGCTCAACCACAAGCAAGGAAAAA
ATTTGGGTTACTTGAGAAACACAAAGATTATGTGGTACGAGCAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E508064
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At3g60360 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|34909148\|ref\|NP_915921.1\|	70.48	6.2e-12	84.21	114 bp (36.3%)	2
Description:	gi\|34909148\|ref\|NP_915921.1\| P0468B07.17 [Oryza sativa (japonica cultivar-group)] gi\|29611899\|s…
arabidopsis	blastx	At3g60360.1	68.55	6.1e-13	76.32	114 bp (36.3%)	2
Description:	At3g60360.1 68410.m06239 expressed protein CGI-94 protein, Homo sapiens, EMBL:AF151852
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39596 (39 Aa)

MSSFKNAIPRRAHKERAQPQARKKFGLLEKHKDYVVRAX

SignalP predicts non-secretion with a score of 0.021

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P159361 (63 Aa)

RMTFLRLLICYTEAIIMSLFFFEKISTFSEINSNRRRRKKKKLGFGRILGIYDLDFGFCLTRY

SignalP predicts secretion with a score of 0.669

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	4502	Utp11	3
2	28351	Utp11	3
5	62687	Utp11	3
1.1	104958	Utp11 - Biological Process: rRNA processing (GO:0006364) - Cellular Component: ribonucleoprotein complex (GO:0030529)	3
2	124785	Utp11 - Biological Process: rRNA processing (GO:0006364) - Cellular Component: ribonucleoprotein complex (GO:0030529)	3
5	135121	Utp11 - Biological Process: rRNA processing (GO:0006364) - Cellular Component: ribonucleoprotein complex (GO:0030529)	3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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