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Unigene SGN-U206998

Unigene Basic Information

Unigene ID:	SGN-U206998
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	206998
mRNA sequence:	Length: 218 bp

>SGN-U206998 Solanum melongena #2 (1 members)
AATTTATTATTATTGCTAGCCGTTTGAGGGGTTTTTCAGGTAAAATTCTTGACAGAACCATGACGAGCGTGTTGGGTGTAGAGTGTGACA
AAATCCGATTGGACTATGAAGCAGAGACAGAGCTGAGGCTCGGGTTGCCCGGAGCCAATGGAAATGAAGTCGAGTCGACTAATAAGAACA
ATGGCAAAAGAGTCTTTTCAGAAACTGTTGATTTGAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
[Hide Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|4887020\|gb\|AAD32146.1\|	87.81	4.2e-17	83.33	159 bp (72.9%)	3
Description:	gi\|4887020\|gb\|AAD32146.1\| Nt-iaa28 deduced protein [Nicotiana tabacum]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209449 (72 Aa)

FIIIASRLRGFSGKILDRTMTSVLGVECDKIRLDYEAETELRLGLPGANGNEVESTNKNNGKRVFSETVDLK

SignalP predicts non-secretion with a score of 0.186

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30539 (53 Aa)

MTSVLGVECDKIRLDYEAETELRLGLPGANGNEVESTNKNNGKRVFSETVDLK

SignalP predicts non-secretion with a score of 0.043

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	35	AUX_IAA	280
2	22040	AUX_IAA	103
5	56303	AUX_IAA	94
1.1	101391	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983)	341
2	118483	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983) AUX/IAA protein - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription (GO:0045449)	92
5	130342		11

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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