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Unigene SGN-U207106

Unigene Basic Information

Unigene ID:	SGN-U207106
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	207106
mRNA sequence:	Length: 263 bp

>SGN-U207106 Solanum melongena #2 (1 members)
GCTTTTTGCAAAGAAAGAGATGCGCATACTGATGGTGGGTCTTGATGCTGCTGGTAAAACAACCATTTTGTACAAACTCAAACTGGGAGA
GATAGTCACCACCATCCCCACCATTGGCTTCAATGTGGAGACCGAGGAATATAAGAACATTAGCTGTACAGTTTGGGATGTCGGAGGTCA
GGATAAGATTCGTCCTTTGTGGAGACACTACTTCCAGAACACCCAGGGACTCATCTTTGTTGTTGATAGCAATGACAGAGATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E520024
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 5 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|32129330\|gb\|AAP73857.1\|	173.7	5.5e-43	97.7	261 bp (99.2%)	2
Description:	gi\|32129330\|gb\|AAP73857.1\| ADP-ribosylation factor [Oryza sativa (japonica cultivar-group)]
arabidopsis	blastx	At5g14670.1	173.7	1.4e-44	97.7	261 bp (99.2%)	2
Description:	At5g14670.1 68412.m01585 ADP-ribosylation factor ARF1, putative similar to ADP-ribosylation fa…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005525 GTP binding
GO:0006364 rRNA processing
GO:0007264 small GTPase mediated signal transduction
GO:0005622 intracellular
GO:0007046 ribosome biogenesis

Protein prediction analysis (3)

Prediction based on longest six frame method

>SGN-P209566 (87 Aa)

ISVIAINNKDESLGVLEVVSPQRTNLILTSDIPNCTANVLIFLGLHIEANGGDGGDYLSQFEFVQNGCFTSSIKTHHQYAHLFLCKK

SignalP predicts non-secretion with a score of 0.123

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P209565 (87 Aa)

LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETEEYKNISCTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD

SignalP predicts non-secretion with a score of 0.334

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30641 (88 Aa)

LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETEEYKNISCTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDX

SignalP predicts non-secretion with a score of 0.334

IPR006689 ARF/SAR superfamily
IPR006688 ADP-ribosylation factor

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	14	Ras_trnsfrmng	471
2	22020	ARF/SAR	137
5	56311	ARF/SAR	90
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	118457	ARF/SAR superfamily - Molecular Function: GTP binding (GO:0005525)	119
5	128986	ARF/SAR superfamily - Molecular Function: GTP binding (GO:0005525) Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264) ADP-ribosylation factor - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: rRNA processing (GO:0006364) - Biological Process: ribosome biogenesis (GO:0007046) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	80

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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