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Unigene SGN-U207297

Unigene Basic Information

Unigene ID:	SGN-U207297
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	207297
mRNA sequence:	Length: 313 bp

>SGN-U207297 Solanum melongena #2 (1 members)
ACTTGCTCAAAGGTCGCCTGCACTTTCCGATCTGGTCATCTCCAAACTTGATCGAAAGATTGACCTGACCTCTCAAGTAATCCGTGTGAC
TACAACTTTCAAGATAGAAAATCCTGGTAATGATCCAATTTCAGAGGTTTTGCTACCATTTGGAGATCACCAGGCAAAAGACTTAGCATT
TTTAGTGGCAACTACCAGTGAAGGGAAAGGAAAAAGTAAAACTTCTTCCAGTAGCCTACCTATTAAAGTTGTTAACCCTGAAGGCATGCC
ACCATCATTGTCTTGGTATTCTGTCTCCCTACCGAAGGAGCTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
[Hide Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7489438\|pir\|\|T04482	86.66	8.4e-17	51	300 bp (95.8%)	2
Description:	gi\|7489438\|pir\|\|T04482 ribophorin I homolog - barley (fragment) gi\|2894378\|emb\|CAA74910.1\| puta…
arabidopsis	blastx	At1g76400.1	78.95	4.5e-16	48	300 bp (95.8%)	2
Description:	At1g76400.1 68408.m08151 ribophorin I (dolichyl-diphosphooligosaccharide-protein glycosyltransf…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209766 (104 Aa)

LAQRSPALSDLVISKLDRKIDLTSQVIRVTTTFKIENPGNDPISEVLLPFGDHQAKDLAFLVATTSEGKGKSKTSSSSLPIKVVNPEGMP
PSLSWYSVSLPKEL

SignalP predicts non-secretion with a score of 0.078

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30817 (104 Aa)

LAQRSPALSDLVISKLDRKIDLTSQVIRVTTTFKIENPGNDPISEVLLPFGDHQAKDLAFLVATTSEGKGKSKTSSSSLPIKVVNPEGMP
PSLSWYSVSLPKEL

SignalP predicts non-secretion with a score of 0.078

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1227	Ribophorin_I	15
2	23119	Ribophorin_I	15
5	57285	Ribophorin_I	14
1.1	102587	Ribophorin I - Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579) - Cellular Component: endoplasmic reticulum (GO:0005783) - Biological Process: protein amino acid glycosylation (GO:0006486) - Cellular Component: integral to membrane (GO:0016021)	12
2	119811	Ribophorin I - Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579) - Cellular Component: endoplasmic reticulum (GO:0005783) - Biological Process: protein amino acid glycosylation (GO:0006486) - Cellular Component: integral to membrane (GO:0016021)	12
5	130133	Ribophorin I - Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579) - Cellular Component: endoplasmic reticulum (GO:0005783) - Biological Process: protein amino acid glycosylation (GO:0006486) - Cellular Component: integral to membrane (GO:0016021)	12

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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