Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U577907 and SGN-U589904 in the current build, Tomato 200607 #2

Unigene SGN-U212812

Unigene Basic Information

Unigene ID:	SGN-U212812
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	212812
mRNA sequence:	Length: 1539 bp

>SGN-U212812 Lycopersicon Combined #3 (64 members)
TCGTGTTTATTTTTTTTTGAAAATTGACAGTATAATAAAAGCTTAGTGCATCGACCCGATCTTTTCGACTCCCAAATTAGTTAAGTCCAC
GCGCTACACGTCTTGGTAAACTTCTTCGCCCCTTCTCTCTCCCTTCCCACTCTCTTCTTCTCCATCTCACCTATAACTTCTCCAGTTTTA
CATATATATATATACCTATAACTTCACCAAAATCATCTAATTCTCTCTGAAATTCAGTTTTCTCATCTGGGTCTGTCTTGTTTTTGATCA
TTCTTGAGTTTTTCTCTTGTGGGTATTCCTTGATTTTGCTCAAAACCGTCAAATTTTGAATCTTTTTGTTGTGGGTCTGTGTCGTTTTGC
TCAAAGTTTGAATCTTTCTATTGTGGGTGTCTCTTGAAACCCTTGAAAAATGGTGCGGTGTAGTAACAATTTAGTGGGGATTCTGAATAT
AGTGACACTTTTGCTGTCGATCCCAATTATAGGAGGAGGGATATGGTTGTCAAAACAAGCAAATACAGAGTGTGAGAGGTTTCTTGAAAA
GCCAGTAATAGCAATAGGTGTTTTTATATTGCTTGTTTCATTGGCTGGTATAATTGGATCTTGCTGTAGAGTTACTTGGTTACTTTGGGT
TTATCTACTTGTTATGTTTTTGTTGATTTTGTTGCTTTTCTGTTTCACAATCTTTGCTTTTGTGGTGACTAATAAGGGTGCTGGTGAAAC
AATTTCTGGTAGAGGGTATAAGGAGTATAGATTTGGGGATTACTCTAATTGGTTGCAGAAAAGAGTTGATAAGCATTGGAATAGAATTCA
TAGTTGTTTGCAGGATAGTAAGATTTGTGATACTTTGATTCAGGAATCAAATACTAAAGCTGATGATTTCTTCAAGAAACATCTATCTGC
TCTTCAGTCTGGTTGCTGCAAGCCATCAAATGACTGTAACTTCCAGTACGTGAGCCCAACAAACTGGACAAGATCATCGACCTCATCCAC
TACCAATCCAGACTGTGCTACATGGAGCAACGAGTCAAATTTATTGTGCTATGGCTGCCAATCCTGCAAAGCTGGGCTGCTAGACAACAT
CAAAAGTGACTGGAAGAGGGTAGCTGTGCTCAACATCATTTTCCTCATCTTCCTCATCATCGTCTACTCTATCGGATGTTGTGCTTTCAG
GAACAACCGAGAGGACAATGCTTGGAAGCGTTATCCTTAAACACTCTCTGTTGAGTCTCGACTGCTTTATGTTGCGTATCGTATTAGACT
ATAGATCACTTAGTATGAGTTTATGCTCTTTCTTGTACAGAGTGTATTTCTTCTGCTAGACAATTTACTTGTGGCTTTTGGATATATGTG
AATTCCTATTATTGAATTCTTTGTTTAGAATTGTCTTCTTGATTAGATGGAGTCTTTCATCTCCATTTTTTTCTGTTGAACAAATTTGTG
TTAGATTTGTATGGTGGAGAATTTTGCATTTAAAAAAAAAAAAAAAAAACTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	19
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	11
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	10
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTSB	seed	1880	1

mRNA member sequences (64)

Alignment image suppressed for unigene with 64 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 0 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	878	NifU_C	21
2	28470		3
5	78978		1

Preceding Unigenes (1)

Unigene	Build
SGN-U143293	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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