Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U581281 and SGN-U593067 in the current build, Tomato 200607 #2

Unigene SGN-U212915

Unigene Basic Information

Unigene ID:	SGN-U212915
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	212915
mRNA sequence:	Length: 1418 bp

>SGN-U212915 Lycopersicon Combined #3 (197 members)
AACACTTTATTTGTTCAAAAGTCATTCCTATTAGACACAAAATGCTGACATAGCAAAAAACATGTAATTCACTTTCCTTGAGCGCGTTAA
TTTATTAAAAATAATATTTTTCTTTTTTTTTTTCTTAATTTATACCCCTAAGTTAATTTTTTAAAAAATAATTAACAAAAAAGAAGAAGA
ACAATTGTATTCTTCTTCCCTATTTCTATCAACCCCACCCCACCCCACCCCAACCCCCATACCCATGCACCAGTGGTTATCTTCTTCCCC
CACCATTCTAATGATTTCAAAATTCTTAGCATCAGTGGAAAACATATTGACCCTCCAACATCACCATTGTAACAAAGAATTGGAAAATCC
ATTCCCAAAACCAAACCAAAGAGAGTAATTGAGCAATGGCTGCTTCCACACAATGTTTCTTGCACCAATATCATGCACTAAGATCTAGCC
CTGCTAGAACATCCTCTGTTTCATCTCCTAAGCCTAACCAATTGATTTGCCGTGCACAAAAGCAAGATGATGCCAGCAACGCCGCCGTCT
CGAGACGATTGGCTCTTACTCTCCTCATTGGTACTGCTGCCATTGGTTCCAAGGTTTCCCCTGCAGATGCTGCCTATGGAGAAGCTGCAA
ATGTTTTTGGTAAGCCAAAGGAAAACACTGATTTCTTGCCATACAATGGAGATGGATTCAAGCTCCAAGTCCCAGCCAAATGGAACCCCA
GCAAAGAAGTTGAGTACCCTGGTCAGGTTCTCAGATATGAAGACAACTTTGATTCCACAAGTAATCTTATTGTTGCAGTTACTCCAACTG
ACAAGAAGTCCATCACCGACTACGGCTCCCCTGAAGAGTTCCTCTCTAAAGTGGACTATCTGCTAGGAAAGCAAGCTTACTTTGGTAAAA
CTGATTCAGAGGGAGGATTTGAATCTGGTGCAGTGGCAACTGCTAACCTGTTGGAGGCATCAAGCGCAACAGTGGGAGGAAAAGAGTACT
ACTACTTGTCAGTATTGACAAGAACTGCAGATGGAGATGAAGGTGGAAAGCACCAGTTGATCACAGCCACAGTGAATGATGGCAAACTTT
ACATTTGCAAGGCACAAGCTGGTGACAAGAGATGGTTTAAGGGTGCTAAAAAGTTTGTGGAGAATGCTGCCACTTCTTTCAGTATTGCTT
AAGAATGGGAAAACTAAAGAAAACCATTATTTAAGTTTGTATGTACTTAGTTCTTCCCCCCTCTACAAAACATATGGTGCTGAGATGAGT
TGCTTAATTGGACTTCTTTTTTGCTCTTTCCAACCAATCCCAAAAATGTTTTTAGACATGTTTCAAGTACTGTTGGAGGAAGCTTAATGT
TAATAATTTCATAATCTGTTGATGGACTAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	7
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	12
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	21
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	20
Solanum lycopersicum	cLES	leaf 4 weeks	5243	10
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	56
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	12
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	5
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	21
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (197)

Alignment image suppressed for unigene with 197 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 3 | blast: 2 | go: 4 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	431	PSII_PsbP	40
2	23071	PSII_PsbP	16
5	57331	PSII_PsbP	14

Preceding Unigenes (1)

Unigene	Build
SGN-U143372	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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