Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U578164, SGN-U580362, and SGN-U590566 in the current build, Tomato 200607 #2

Unigene SGN-U213411

Unigene Basic Information

Unigene ID:	SGN-U213411
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213411
mRNA sequence:	Length: 2771 bp

>SGN-U213411 Lycopersicon Combined #3 (76 members)
AGGTAGCTCTACCAATGTAGTTATTTTGTTGTCATCGCGATTTGAACATTGAACACTGGTATTGCAGCAAAGACAGTGTAATGTTACAGA
GTCGAGGAGCAAGAAAATGATAGATCGATAGCAAATGGCTATTGTCTCATACAAAACTCAGAGAATACCACAAATGCATTGAGGTAGCAA
AAAGAAATCACAAAATGCAAGCATTACTGGACTACCACATCTCTTGAGTATTATTTGGTAGGTGCAATGAGGGGATGTGGGGGAAAAAGG
ACTGCTTTAGCGCGTAATATATAGATATATCAATAATAAGTAAACATTCCACGCGAACAAAACATGGTGGAACTAACAGATGGCCATAGT
GCATACCGAATGATAATCACTTGGCTTCATCTATACTTCACTCTTTGCCATCGGCAGCACGGAGGGAGCCTAATTCAACTGGAGCTTGTG
TTCCCACAACTTTGGATGATCCATAAGTGGACACATCGGCACCCTTCACCTTCTCTTTCTCAATTTGTTCCTTTATCCAGAAATACGTAA
TCCTCAACCCATCCTTCAACTTCATATTAGGAGCCCAGCCAAGCTTTTCCTTGATGAGAGTGTTGTCAGAGTTTCGACCACGCACACCCT
CTGGTCCTGGAATGTGATGGATCGGAAGGTTCTTGCCATCAAAGCTGAGGACTATCTCTGCCATCTCATTCATGCTTACCATCTCATCAC
TTCCGATGTTCACAGGCTCTCTGAAGTCGGATTTTGTTAACCTCAGGACACCTTTTTTTGGGTTTTTCACAGCCGTGGGAGTAATTACAT
TTTTGACCTTCCAAACTCCAAAATCATCAACAATTCAATGGCCGTCTCTAGTTACGCTAGGGCATTTCCGTCATTCGAATGTCGTTCGGA
GCCTGATTTCTCCGGCAGCCTTCCACATCCTAAAGCCGGCGTTCGGTTCTCCGGCAAGTATAACTCCGGGAGTAACCGATCTCAGGTTTA
TGGACTGTCTTCTTTGATCTATAGGTTTCCGCCTAATTTCGTGAGGCAGCTAAGCATTAAGGCTAGGAGGAATTGCAGCAACATCGGCGT
GGCTCAAGTTGTGGCGGCTTCCTGGTCTAACAACCAAGCCGGTCCTGAGTTCACTCCGGCGGCTAATGCTGTCGATTCATCCGCTTCCGC
TGCTGTTACTTCGATTGGTATCACCACAGGTGACGAGGAGGTGGCGGTTGTGGAAAATGCGGATTGTAGTGATCAAAATGTACAGATTAA
GGGTTCGACAGGTGTTAAATATGCTTCATTTTTGAATTCAGATGGAAGCGTTGCTATTCATGCCGGTGAAAGGTTGGGACGCGGTATTGT
TACTGATGCCATAACTACCCCAGTGGTTAACACATCTGCTTACTTCTTCAACAAAACTTCTGACCTTATTGATTTTAAGGAGAAAAGACG
TGCAAGTTTTGAATATGGCCGCTATGGGAACCCCACTACTGTTGTTTTGGAGGAGAAAATTAGTGCACTTGAGGGTGCTGAATCAACCTT
GATAGTGGCATCTGGAATGTGTGCTAGTACTGTCATGTTCCTGGCCTTGGTTCCTGCTGGTGGGCATATTGTTACTACTACAGACTGCTA
CAGGAAGACACGTGTTTTTATTGAGACAATATTACCTAAAATGGGAATTACGGCCACAGTTATTGATCCAGCAGATATGGGAGCTTTGGA
GTTAGCATTAAATCAGAAGAAAGTGGATCTTTTCTTTACTGAGTCTCCAACAAATCCATTCCTGAGATGTGTTGACATTGAGCTGGTTTC
AAAGCTTTGCCGTGAAAAAGGAGCCTTGGTTTGCATAGATGGAACATTTGCAACTCCTCTTAACCAGAAGGCCCTTGCTCTAGGGGCTGA
CCTTGTTGTGCACTCTGCTACAAAATTCCTTGGTGGGCACAACGATGTTCTTGCAGGTTGTATTAGTGGTCCTGAAAAATTAGTTTCAGT
AATCCGAAACTTGCATCATATCCTGGGTGGTGCTCTCAATCCTAATGCTGCATATCTTATCATCCGAGGCATGAAGACGCTGCATCTTCG
TGTACAGCAACAAAATTCTACTGCATTGAGGATGGCCGAAATTTTAGAGGCTCATCCCAAGGTGAAACACGTCTATTATCCAGGCTTGCC
GAGTCATCCGGAATATCACCTTGCAAAGAAACAAATGACTGGCTTTGGTGGTGTGGTCAGTTTTGAGGTTGATGGAGACCTCCTAACTAC
TGCAAAATTTGTGGATGCTCTGAGGATTCCTTATATTGCTCCATCGTTTGGAGGTTGTGAGAGCATTGTGGACCAACCAGCAATAATGTC
TTATTGGGATCTTAGCCAGTCTGATAGAGCAAAGTATGGCATCTTGGATAACTTGGTCCGATTTAGCTTTGGAGTGGAAGATTTTGAAGA
TGTGAAAGCTGATGTTCTTCAGGCTTTGGATTCCATTTAGGCTGCTGTTTCACCTGCAACGATTTTTTTCCTTTTCCTTTTCATCCTGAT
TTCGTTGTTCGTACTTGTGTTATTGCTGACTTCCATCTCGTATCCAATTGTTTGAACCTAATTAAAGGATCGTCTAGTAGATGATTCAGT
CCATTAAATTATTTCAAAAAAAAAAAAAAAAAAAAAAAATTTCTTCAAGGATGAATATTCCTCTCATGTCGTTTAAAGAATGCATTTTTT
TTAAAAAAAAATGGAAGGGGAGAAAATCAATTTGTGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	7
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	15
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	13
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSC	seed	2256	1

mRNA member sequences (76)

Alignment image suppressed for unigene with 76 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	420	Cys_b_lyase_bac Cys_b_lyase_euk Cys_Met_Meta_PP Met_gamma_lys O_suc_HS_sulf OAH_OAS_sulfhy	41
2	22377	Cys_b_lyase_bac Cys_b_lyase_euk Cys_Met_Meta_PP Met_gamma_lys O_suc_HS_sulf OAH_OAS_sulfhy	32
5	57013	Cys_b_lyase_bac Cys_b_lyase_euk Cys_Met_Meta_PP Met_gamma_lys O_suc_HS_sulf OAH_OAS_sulfhy	18

Preceding Unigenes (1)

Unigene	Build
SGN-U143576	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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