Sol Genomics Network

Unigene SGN-U268615

Unigene Basic Information

Unigene ID:	SGN-U268615
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268615
mRNA sequence:	Length: 1685 bp

>SGN-U268615 Solanum tuberosum #4 (92 members)
AGAGTATGGTTTATGTGTCATCTTTCTCTCTCTCTATATATACCCAAATTCTTGTTATCATAATTGTCTCTCAACCGTTCAATTCTCTTT
CTAATATCTCTCCATTGCCTCAATCTTTTTCTCCTGCATACTTTTAGAGAATGGGAAGCTCTGGTGGTATTAACTATGGTTCTTACACTT
ATGAGAATCTTGAGAGGGAACCTTACTGGCCATCTGAGAAACTCCGTATTTCCATTACTGGGGCTGGAGGATTTATCGCTTCTCACATTG
CTCGTCGTTTGAAGAGCGAGGGCCACTACATAATTGCCTCCGATTGGAAGAAGAATGAGCACATGACAGAGGATATGTTCTGTCATGAGT
TTCATCTTGCGGATCTTAGGGTTATGGATAATTGCTTGAAGGTAACAAAAGGTGTTGACCATGTCTTCAATCTCGCTGCTGATATGGGTG
GCATGGGTTTCATTCAGTCCAACCACTCGGTTATCTTCTATAACAACACTATGATCAGCTTCAATATGATGGAAGCTGCTAGGATTAACA
GTGTCAAAAGGTTCTTCTATGCATCTAGTGCTTGCATATACCCCGAGTTCAAACAACTCGAAACAAATGTCAGCCTGAAAGAAGCTGATG
CTTGGCCTGCAGAGCCTCAAGATGCATACGGCTTGGAAAAGCTTGCCACAGAAGAACTGTGCAAACATTACAACAAGGATTTTGGAATTG
AATGTCGTATTGGAAGGTTCCATAACATCTATGGACCTTTTGGAACTTGGAAAGGTGGAAGGGAAAAAGCTCCTGCCGCTTTTTGTAGAA
AAGCACAAACTGCAACGGATAAGTTTGAAATGTGGGGAGATGGACTTCAAACACGTTCATTCACCTTCATTGATGAGTGTGTTGAAGGGG
TTCTTAGATTGACAAAATCCGACTTCCGAGAGCCAGTGAACATAGGAAGTGATGAGATGGTCAGCATGAATGAGATGGCTGAGATGGTTC
TCAGCTTTGAGGACAAGAAGCTTGCTGTCCAACACATTCCAGGCCCAGAAGGCGTCCGTGGTCGCAACTCAGACAACACACTGATAAAAG
AGAAGCTTGGTTGGGCTCCAACAATGAGATTGAAGGATGGTCTGAGAATTACATACTTCTGGATCAAGGAGCAGATCGAGAAAGAGAAAT
CTCAAGGAGTTGATACTGCAACCTATGGATCTTCCAAGGTGGTGGGCACCCAAGCTCCAGTTGAGCTAGGTTCCCTTCGTGCTGCTGATG
GCAAGGAATAAGTTCATTCCTTCTGTCATCATTTCAACTGGAAGCCAATCCCTCTGCTATGACATTGCTGCATTATGTATTATGGCGTCG
TAGAAGATGTGTTAAGTTCTGGTAATTGTTGGCTTTTCTTGGTTTTAGTTTGAACATGTCAATGTAATCTATTACCCCTTGGTCTTGTGA
AGGGGATGATAGTTTAATAGTATATTTATCAGTCGTTCGAGAAGATCTCAATGTGAGAATTGAATAACTGCCAGTGGATCCTCTCTTGTT
TTTTTTACCTAGTTCAGGATCTTGCTGTTGATGATCATGTAATCAAAATTTTAATCTTGTTAAGGTTTATATGTAAGATTTCATTGCAAA
GTTAAAAAAAAAAAAAATCTCTTCATATAGTAATGAGATTGAAATTTTCTTAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ268848	NAD-dependent epimerase/dehydratase

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXFL	Floral buds	6603	5
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STM	mixed tissues	14805	7
Solanum tuberosum	STOL	Stolon	6462	3
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	11
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	19
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	5
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	10
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	8

mRNA member sequences (92)

Alignment image suppressed for unigene with 92 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	9	DnaJ_N	612
2	23896	dTDP_gluc_dehyt GDP_mann_dehyd GalE Epimerase_Dh 3Beta_HSD	10
5	57958	dTDP_gluc_dehyt GDP_mann_dehyd GalE Epimerase_Dh 3Beta_HSD	10
1.1	101369	Heat shock protein DnaJ N-terminal - Molecular Function: heat shock protein binding (GO:0031072)	604
2	120051	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	11
5	130337	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	11

Preceding Unigenes (1)

Unigene	Build
SGN-U243497	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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