Sol Genomics Network

Unigene SGN-U268920

Unigene Basic Information

Unigene ID:	SGN-U268920
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268920
mRNA sequence:	Length: 1526 bp

>SGN-U268920 Solanum tuberosum #4 (58 members)
AAAGATGGCTGATACAAATACAAAGAACAAGAATGAAGATCCATCCATAAGCCTTGTTTCTGATGGAAAATCTTCTAATGAACCATCAAA
AAATGACCAAGTAGTAGAAACACAACCAGAAAATAGTACACAAAATCAAGAAAAAGAAAATATTATTGCTCAACAAGGCCAAGAAGAAGA
GGAGGAGATGAATGCTAATGATGAGGAAAGAGCAAATTTTTCAACACCTCCAGGAAAAAGATCAGCTCCTAAACCTAAGACGGGTTGAAA
TTAATTAATTAATTAAGTCTTTGGGAATTCCAATATTGTGATAATTATTTCAAGAAACCTAGTTGTTTTCTAGGTTTTTTTTTTTGGTTT
GTTCTTCTCATTTTTAATATTGTAATTTGTAATGGTTAATTCTTCTTGGTTCTTTGTTTGTTTTGCTCATTTTTTAATATTGTAATGGTT
AATCTGTTTTAAAAAGAATGTCATAAGAAATAATTTGATTTAAAAATTCTTTAGTTCAAAATTAGAAGGTTTAAAAATTAAAAAAAAAAA
AAAAAAAACTCGAGACTAGTTTTCTCTTCTCACACAACAAATTCATTTTCTACTCACAATTTCTTCACTTTCTCTCTCTAGAACTAGAAA
AAAATGGCGATCAAGGTCCATGGCCCTATGATGTCCCCTGCTGTTATGCGAGTCGTAGCTACACTCAAAGAGAAAGATCTTGATTTTGAA
CTTGTTCCTGTCAATATGCAAACTGGTGATCACAAAAAGGAACCATTCATTTCCCTAAATCCATTTGGTCAAGTTCCAGCTTTTGAAGAT
GGAGATCTCAAGCTTTTTGAGTCAAGAGCCATTACACAATACATAGCTCACACATATGCAGACAAAGGGACCCAACTCTTACCCAATGAC
CCAAAAAAAATGGCAATCATGTCAGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCCATTGGTTCAAAACTAGGCTTTGAGATTGTC
ATTAAGCCAATGTTGGGCATGGTGACTGATGATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCT
AGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTTACACTAGCTGATTTGCACCACGCCCCGTCTTTGCACTACTTGATGGGGAGT
AAAGTGAAGAGCTTGTTCGATGCTAGGCCTCATGTTAGTGCTTGGTGTGCTGATATCTTGGCTAGGCCAGCTTGGTCTAAGACACTTGAG
TTGTCAAAACAGTAAGATTAGTGGCGGATGGTTGAGTAACGCGTTGGAAGGAAGGGGGAACAACAGTTGGAAACGGCTGCTAATACCTCC
TAGGCTGAGGAGCAAAATATGGCCTATGTATTACTACTAGGTTAATAAATTTAGGCCATAAGTAACACTTTTGTAATTTTTTGCTTTGTG
GTGCACTCTTTTTGTTCTTCCTATCTTTCTTGTATCGTAAGACGTTCTCTTTTATTGAATTCTTCGTGTGTGTGAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AJ252728	16S rRNA

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	4
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	5
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	10
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	7
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	7

mRNA member sequences (58)

Alignment image suppressed for unigene with 58 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	29	Mal_ac_isom	300
2	22445	GST_Cterm Mal_ac_isom GST_Nterm	29
5	56743	GST_Cterm Mal_ac_isom GST_Nterm	24
1.1	101396	Thioredoxin-like fold Glutathione S-transferase C-terminal-like	299
2	118856	Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	27
5	129766	Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Glutathione S-transferase N-terminal Thioredoxin-like fold	15

Preceding Unigenes (2)

Unigene	Build
SGN-U243736	Solanum tuberosum #3
SGN-U259236	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

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