Sol Genomics Network

Unigene SGN-U269516

Unigene Basic Information

Unigene ID:	SGN-U269516
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269516
mRNA sequence:	Length: 1297 bp

>SGN-U269516 Solanum tuberosum #4 (7 members)
TGATGCAATAACTACCCCAGTGGTTAACACATCTGCTTATTTCTTCAAGAAGACTTCTGACCTTATTGACTTCAAGGAGAAAAAACGTGC
GAGTTTTGAATATGGGCGCTATGGGAACCCCACTAGTATTGTTGCAGAGGAAAAGATAAGTGCACTGGAGGGTGCTGATGCAACCTTGTT
AATGGCATCTGGAATGTGTGCTAGTACTGTATTGTTGTTGGCATTGGTTCCTGCTGGTGGGCATATTGTAACAACAACAGACTGCTATAG
GAAGACCCGGATATTTATTGAGACAATACTGCCTAAAATGGGAATCACGGCGACAGTCATTGACCCAGCTGATATTGGAGCTCTAGAGTC
TGTGCTAAATCAGAAGAAAGTGACTCTTTTCTTTACCGAGTCTCCAACAAATCCATTCCTGAGATGTGTTGACATTGAGCTTGTTTCGAA
GCTTTGCCATGAAAAAGGAGCATTAGTTTGCATAGATGGGACGTTTGCAACTCCCCTTAACCAAAAGGTCCTTGCTCTAGGGGCTGACCT
CGTTGTGCACTCTGCAACAAAATATCTTGGTGGCCACAATGATGTTCTTGGAGGTTGCATCAGTGGTCCTGATAAGTTAGTTTCAGCAGT
TCGTACCTTGCATCATATCCTGGGTGGTGCTATCAATCCTAATGCTGCGTATTTAATCATCAGAGGCATGAAGACGTTGCATCTCCGTGT
ACAGCAACAGAACTCAACTGCACAAAGGATAGCCGAAATTTTAGAGGCTCATCCAAAGGTGAGGTGTGTCTATTATCCAGGCTTGCCAAG
TCATCCAGAATACCATCTTGCAAAGAGACAAATGACTGGTTTTGGTGGGGTGGTCAGTTTTGAGGTTGATGGGGATCTGCTAACTACTGC
AAAATTTGTTGATGCTCTAAAAATTCCTTATATTGCTCCATCGTTTGGAGGTTGTGAGAGCATTGTGGACCAACCAGCAATTATGTCTTA
CTGGGATCTTAAGGAGTCAGAGAGAGCTAAGTATGGGATCATGGACAACTTGGTTCGATTCAGCTTTGGAGTAGAAGACTTTGAAGACTT
GAAAGCTGATATTCTTCAGGCGCTGGAGTCCATGTAGGGTGTCTTACCTGCAACCTGATTTCGTTTTCCCTTGGATCGTTTTCTTTCCAC
TAGCTTTGAACTTCTTTTTCATCTCTAATTAGTGGAGTAGTCACTTCCCCCAGTTGTCAGAATGTATTGAATGGATCATTGAGCAGCTGA
TGCAATCCAATGTCAGAGTGGGATGTTATTGTTGTTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
cgs2	cystathionine gamma-synthase isoform 2	cystathionine gamma-synthase

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	420	Cys_b_lyase_bac Cys_b_lyase_euk Cys_Met_Meta_PP Met_gamma_lys O_suc_HS_sulf OAH_OAS_sulfhy	41
2	22377	Cys_b_lyase_bac Cys_b_lyase_euk Cys_Met_Meta_PP Met_gamma_lys O_suc_HS_sulf OAH_OAS_sulfhy	32
5	57013	Cys_b_lyase_bac Cys_b_lyase_euk Cys_Met_Meta_PP Met_gamma_lys O_suc_HS_sulf OAH_OAS_sulfhy	18
1.1	101789	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes - Biological Process: amino acid metabolism (GO:0006520)	37
2	118834	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes - Biological Process: amino acid metabolism (GO:0006520)	28
5	129661	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes - Biological Process: amino acid metabolism (GO:0006520)	17

Preceding Unigenes (1)

Unigene	Build
SGN-U244204	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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