Sol Genomics Network

Unigene SGN-U269993

Unigene Basic Information

Unigene ID:	SGN-U269993
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269993
mRNA sequence:	Length: 1461 bp

>SGN-U269993 Solanum tuberosum #4 (21 members)
AGTTAGTAGTGGGATCGAACCGCCAAAAGCAAAAGCCCTAGCCTCCTTTAACGAGCCAGAGCGAGGGAGCGAATCGCTCTATTCTCGCTC
TGGCTGTTCAATTCATCAACAATTGCCAAGTTCATGGTTCCATGTCATGTCGAAAAGGATTCTTTGCAAGTTCTTTGTAAATGGTGCATG
TCTGAAAGGAGAGTACTGTGAGTTCTCGCATGATTGGAAAGATCCTCCAAATAATGTATGCACATACTACCAAAAAGGATTATGTGCCTA
TGGCAGCAGGTGTAGATACAAACATGTTAAAGTTTCTGAACAACCCTCACTTCCATCTTCGTCAGCTCCAGCTCAACATCTGCTCTCAGC
TTCTCCTCCCACCACCCTCTCTCCTGGAATGCTAGCAAATGGTGCAGGACTTCTTTCAGGCATTTCTTCCGCGTCAGGCAGATCTTTTTA
CCCTCCCAACCAGCCTGTATGGAGTGAAAATTCAGAGCATCATGATGCGGCAGTTATTGATAATATTGTCGAGTTAAAGAGAATGAATCC
AGCTGATCGATCAATTTGCTCTTTTGCTGCTGCTGGTAAATGTCCACGGGGAGAAAACTGTCCTTATATTCATGGAGATTTATGTCCAAT
ATGTGCGAAGAATTGCTTGCATCCCTTTCGGCCTCTTGAAAGAGAGGAGCATATAAAAATATGTGAGAAGAGGCAAAAGCGCCTTGAGTT
ACTGAAGCATAGTCAAGAAATAGAGTGCAGTGTATGTCTTGAACGTGTACTCTCTAAGACAACTGCAGCAGAGCGGAAGTTCGGGATCCT
TTTTGAGTGTGATCATCCATTTTGTATATCATGTATAAGGAATTGGCGCAGTGGTACTCCTTCCTCTGGGGTTGATATCAACTCGACATT
TAGGACCTGCCCTGTATGCCGGAAGCTTTCATATTTTGTCATTCCAAGTGTCATTTGGTTCTCCACAAAAGAAGAAAAGCAAATTATCCT
TGACAGCTACAAAGCCAAACTCAGGTCTATTGATTGCAAGCATTATGACTTTGGCAATGGGACTTGCCCATTTGGAAATAGTTGTTTCTA
CAAGCATCAATACCGTGATGGCCGTCTGGAGGAAGTGGTACCGCGTGATCTTGGTCATGAAAATGGAAGCACAGTGATTGCTAAAAATAT
TAGGCTCTCAGACTTGCTTGGCAATTTGAGAAGAAGGTGAGCTGTGAATATGCTTATAGTGATTTCAGGGGTTGAAGTCGGAAACAACTT
ACATTTCTTCTAAGTGGTTACAAGATTTATTGAATTATGTGAGTACTGGTGAATTATGCGTTGGGAGTTGAGGTGCAGACATGGCATTCC
AGACACAAGGGACTTGCTTGTATAATCATGGATACATGTGTATGGAACTTAACCTATCCCCTAAATAAAAAAATAAAAAAAAAAAAAAAA
AACTCGAGACTAGTTCTCTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	5
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	6

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3098	Metallthion_ Znf_ring Znf_CCCH	6
2	26721	Metallthion_ Znf_ring Znf_CCCH	5
5	87550		1
1.1	102087	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	22
2	122429	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270) Zinc finger CCCH-type - Molecular Function: nucleic acid binding (GO:0003676) - Molecular Function: zinc ion binding (GO:0008270)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U244574	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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