Sol Genomics Network

Unigene SGN-U270015

Unigene Basic Information

Unigene ID:	SGN-U270015
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270015
mRNA sequence:	Length: 1465 bp

>SGN-U270015 Solanum tuberosum #4 (11 members)
CCGAGCTGCGCGTGGTAAATTCGAAAGGAAGAAACCCCATGTCAATATTGGTACAATTGGCCATGTTGACCATGGGAAAACCACACTTAC
AGCTGCTTTGACCATGGCGCTTGCTTCTCTGGGTAACTCCGCCCCCAAGAAGTATGATGAAATTGATGCTGCCCCTGAAGAAAGAGCTCG
TGGTATTACGATTAATACTGCCACAGTGGAGTATGAAACTGAAAATCGGCATTACGCTCATGTGGATTGCCCTGGTCACGCTGATTATGT
GAAGAATATGATTACTGGTGCTGCTCAAATGGATGGAGCTATACTTGTTGTTTCAGGTGCTGATGGTCCAATGCCGCAGACTAAGGAACA
TATTTTGCTTGCTAAGCAAGTGGGTGTCCCTAATATGGTTGTTTTCTTGAACAAAGAGGACCAAGTTGATGATGAGGAGTTGCTTGAGCT
TGTTGAGTTGGAGGTAAGAGAGTTATTGTCAAGTTATGAGTTTCCTGGTGATGATATTCCTATTCATTGTGGGTCTGCCCTTTTGGCTTT
AGAGGCTTTAATGGCTAATCCTAGTATTAAAAGGGGTGATGATCAATGGGTTGATAAGATTTATACATTGATGGACTCTGTTGATGAATA
TATTCCTATTCCACAAAGACAAACTGAATTGCCTTTCTTGATGGCTATTGAAGATGTGTTTTCTATTACTGGTAGAGGTACAGTGGCTAC
AGGGAGAGTTGAGAGAGGGACTGTTAAGACAGGGGAAATTGTTGATATAGTTGGATTGAAGGACACTAGGAACACTACAGTAACAGGAGT
TGAGATGTTTCAGAAGATATTGGATGAAGCAATGGCAGGAGATAATGTGGGGTTGTTGTTGAGAGGTATTCAAAAGATCGATATTCAAAG
AGGAATGGTGTTGGCAAAACCTGGATCAATTACTCCACACACCAAGTTTGAAGCTTTGGTGTATGTGTTGAAAAAGGAAGAAGGTGGCAG
GCATTCCCCTTTCTTTGCTGGTTATAGGCCACAGTTTTACATGAGAACAACTGATGTGACTGGAAAGGTTACTGCTATTATGACTGACAA
GGGAGAGGAATCTAAGATGGTCATGCCTGGTGATCGCGTAAACATGGTGGTCGAGCTCATTATGCCAGTTGCTTGTGAGCAGGGAATGAG
GTTCGCTATTAGGGAAGGAGGAAAGACTGTCGGAGCTGGTGTTATTCAGAAAATCTTAGAATGATGAACTTGCAGCTGAGCATCTCTTTT
TACATATGGTCGGATTTTTCCATTGAAGTTTATTAATCCATTGTCATATATGCGACTTTTTGGTTACTTTTGTTATGTCTTAGAATCTTA
CTTTAGTTGAAGTATCCTGTTTAATCCCCCAATTCTACTGAACTTTTGGAATTTTCCCCGTCTCTTGTTTCACTTTTCATTTGCTTGAAA
GAAATGATATCATTTGCTCTCAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	22048	EFTU_Cterm	97
5	56876	EFTU_D2 Cons_hypothATPbd Small_GTP LepA ProtSyn_GTPbind EF1_alpha tRPa EFTU_Cterm TEF_SelB EF-Tu	21
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118470	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	104
5	129491	Translation elongation factor GTP-binding - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Translation elongation factor Tu - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	20

Preceding Unigenes (1)

Unigene	Build
SGN-U244720	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
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