Sol Genomics Network

Unigene SGN-U270310

Unigene Basic Information

Unigene ID:	SGN-U270310
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270310
mRNA sequence:	Length: 1065 bp

>SGN-U270310 Solanum tuberosum #4 (21 members)
GCCGTGCCACCCACACTCCTCTCCTTTCTCTCTCTTAGGGTATAATTTTTCCTTTCTCTCTCTAACAAATCTGTCCATTACAGCCGTGCC
ACCCACACTCCTCTCCTTTCTCTCTCTTAGGGGATTTGGGATTCAGATCGGTGAAATAGAGACATCATGTCGGATAGATTGACGCGTATC
GCCATCGTTAGCGCCGACAAGTGCAAGCCGAAGAAGTGCCGCCAAGAATGCAAGAAGAGCTGCCCAGTTGTTAAAACTGGTAAGTTATGT
ATAGAGGTCACTGTAGGCTCGAAGATTGCTTTCATCTCAGAAGAGCTGTGTATTGGATGTGGTATTTGTGTAAAGAAATGCCCATTTGAA
GCAATTCAGATCATCAATCTGCCAAAAGATCTAGACAAGGATACAACCCATCGTTATGGTCCCAACACTTTCAAATTGCACAGGTTACCT
GTCCCTAGGCCAGGACAGGTTCTTGGTCTGGTTGGCACAAATGGAATTGGAAAGTCAACTGCCCTAAAAGTTTTGGCTGGAAAATTGAAA
CCAAACTTGGGGCGCTTCACGAACCCTCCTGATTGGCAAGAAATCTTGACTCACTTTCGAGGATCCGAACTGCAGAACTACTTCACTCGC
ATTCTGGAAGATAACTTAAAGGCAATTATCAAGCCTCAGTATGTCGACCATATTCCAAAGGCAGTTCAAGGAAACGTTGGACAAGTGCTT
GACCAAAAAGATGAGAGAGACGTGAAGGAAAAACTCTGTTTTGATCTAGAGCTGAATCAGGTTTTGGATCGTAATGTAGGTGATCTATCT
GGTGGAGAGCTTCAGAGGTTTGCTATTGCTGTTGTTGCAATACAAAATGCAGAGATATACATGTTTGATGAGCCTTCAAGTTACCTTGAT
GTGAAGCAAAGGCTTAAAGCTGCCCAAGTTGTCAGATCCTTGCTTCGACCAAATAGCTATGTCATCGTTGTGGAGCATGATCTTAGTGTG
CTTGATTATTTGTCGGATTTCATTTGCTGCTTATATGGGAAGCCTGGTGCATAGGGAGTTGTGACCCTACCCTTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	10
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 8 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	16	ThiQ_ABC_transpt ABC_transporter Sulph_transpt1 CbiN_ATP	404
2	24061	ThiQ_ABC_transpt NtrCD ATP_GTP_A_BS ABC_transporter CcmA IISP Sulph_transpt1 CbiN_ATP	9
5	58116	ThiQ_ABC_transpt NtrCD ATP_GTP_A_BS ABC_transporter CcmA IISP Sulph_transpt1 CbiN_ATP	9
1.1	101386	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	388
2	120439	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	9
5	130722	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U244504	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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