Sol Genomics Network

Unigene SGN-U270552

Unigene Basic Information

Unigene ID:	SGN-U270552
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270552
mRNA sequence:	Length: 1665 bp

>SGN-U270552 Solanum tuberosum #4 (19 members)
CTTCATCCACACCCAAAAACCCTTTTAAGCCTAGAAAAAATATCCCTATACGCCTTCAAATTCTTCTCAAAAATCTTTTTCTCCAAGCTT
CCTCTTCCAGCAGCCTATTTTAACATCCCCTCGGCCCTTCAAGAATTTCCAAATCTCACACTAAAGAAGGAGAGAAAGAGTAGTGAGTGA
ATGGCAGGAGGTGGTTCAGCTGCTGGAAAGGGTGATGCCCCAAGTGTTAGGATAGTGGTTGCAGGTGATGCTAAAACTGGAAAGTCTAGC
TTGATCTTGACAGCCGCCACTGATACTTATCCGCCCAATGTCCCTCCGGTGTTGCCGCCTACAAGGCTCCCTGATGATATCTATCCTGAT
AAAGTACCTGTAACTATTATTGATACGTCTTCTAGTCCTGAAAATAGAGGTAAACTTGTGGAAGAGCTGAAGAAAGCTGATGCAGTTGTA
TTAACTTACGCTTGTGATAAGCCTGCTACTCTTGATCGGCTGAGTACTTTCTGGCTTCCTGAACTCCGCAGATTGGAGGTTAGGGTTCCT
GTTGTTGTCGTGGGTTGCATGCTAGATAAGAGGGATGAACAGTACCCTGTCAGTTTGGAGCAGGTGATGTCACCAATCATGCAACAATTT
CGAGAGATCGAAACATGTATTGAATGTTCAGCATTTAGACATATACAAATTCCTGAGGTTTTCTACTATGCACAAAAAGCCGTGCTTCAT
CCAACTGCTCCACTATTCGATCAGGAGGCTCAAACTTTAAAGCCTCGTTGTGTTAGGGCTTTGAAGCGAATATTTATTCTTTGTGATCTT
GATAGAGATGGTGCCCTAAGTGATGCAGAGTTGAATGATTTTCAGGTCAAATGCTTCAATGCTCCACTACAGCCTTCTGAAATAGTTGGT
GTTAAGAGAGTCGTGCAAGAAAAATTACAGGAAGGTGTCAATGAACAGGGTCTTACATTGACAGGTTTCCTCTTTCTTCATGCACTGTTT
ATTGAAAAAGGGCGTCTGGAGACAACCTGGACTGTCCTGCGAAAATTTGGCTACAATAACGAGATCAGGCTGAGTGAGGATCAGCTGCCT
CCCCCCATCAAGAGACATCCCGACCAGAGTGTGGAGCTGACCAATGATGCATTGGATTTCCTCAGAAGAATCTTCTTCACATTTGACATT
GATGGTGATGGTGCTCTTCGATCCAATGAGCTTGATGACTTGTTTTCCACTGCTCCAGAGAACCCCTGGAGTGATGCTCCGTATAAGGAT
GCTGCAGAGAAGGATGCCTTGGGAGGACTCTCTGTTGATGGTTTTCTTTCAGAGTGGGCATTGATGACACTTCTTGATCCCATTTATAGT
GTGGAGAATCTTATATATATTGGATATGCTGGTGATCCTTCGTCTGCTATTCGTGTAACTCGAAGAAGACGTTTAGATCGCAAGAAGCAA
CAATCAGATAGAAATGTCTATCAGTGTTTTGTTTTTGGGCCAAAAGAGGCTGGAAAATCAGCCATTCTGAATTCATTTATTGGAAGGCCG
TTCCCAGAAGAGTACCAATCAACTACTGGCAATCAATATGCGGTAAATGTTGTTGATCTAGGGGGGGCTAAAAAATCTCTTGTGCTACGA
GAGATACCAGAAGATGAAGTGAAGAAGCTTCTATCTAGCAAGGAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	8

mRNA member sequences (19)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	978	Small_GTP Ras_trnsfrmng EF-hand	19
2	23032	Small_GTP Ras_trnsfrmng EF-hand	16
5	57121	Small_GTP Ras_trnsfrmng EF-hand	16
1.1	101377	Ras GTPase - Molecular Function: GTP binding (GO:0005525) - Biological Process: small GTPase mediated signal transduction (GO:0007264)	504
2	119599	EF hand associated type-2 Miro-like EF hand associated type-1 EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	14
5	129926	EF hand associated type-2 Miro-like EF hand associated type-1 EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	14

Preceding Unigenes (1)

Unigene	Build
SGN-U244945	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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