Sol Genomics Network

Unigene SGN-U271094

Unigene Basic Information

Unigene ID:	SGN-U271094
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271094
mRNA sequence:	Length: 1253 bp

>SGN-U271094 Solanum tuberosum #4 (16 members)
AAATTGCATTACACAACTTCTTCTTTGTACCAAAGGATAGTAAACAAAGGAGCAATCTTGATCAAGAAAGTGTTTATGAAAATTTGGGGG
TTTTTGTGTTTTGAGATTTGAGGTTTTAATTTGGTGTTTTGGGTATTTCAAGAATCAATTTTTTTTGGAGAAAAAAAAAATGACAAGTAT
AGTGGGAAATCAGAAAGATCTGAATTTCAAAGCTACTGAGCTGAGGTTAGGTTTGCCTGGTACAGAAGATCAAGAATCTGACCAAGAAAT
ATCAAATTCCAAGAATAACAACAAAAGGGCTTTGCCTGAATCAACTCATGATGAAGAAGATTGTGAATCTAAGTCAAGTTCTGATCATGT
CAAAACCCCACCTGTTGCCAAGGCACAAATTGTGGGGTGGCCACCAGTGAGATCTAACAGGAAAAACATAATCCAACCAAAGAAAACAGA
ATCTGAATCTGGAATGTATGTCAAAGTTAGCATGGATGGTGCCCCTTATCTAAGAAAAATTGATCTGAAAATGTATAAATGTTATCAAGA
ACTACTAAAAGCCTTGGAAAACATGTTCAAACTCACCATAGGTGAATACTCAGAAAGAGAAGGCTATAAAGGATCTGAATTTGCCCCTGC
TTATGAAGACAAAGATGGTGACTTGATGCTTGTTGGTGATGTTCCTTGGGAAATGTTTATGTCTTCTTGTAAGAGGCTGAGAATAATGAA
AGGATCAGAAGCAAGAGGCTTGGGATGTGGAGTTTAACTTATAAATTATAAAAATTCCCAAATAGAACATTATGATGATGATGAAGTTTT
TCTTTTTTCTCTTTTTACAGTAAAAAGAGTCTTTTTTTCACCTTAGGTTCTTGATTAAAATGAACCTAAATATTGTAATCAAAACAGTTT
TTTCTCTGGACAGAAAAAACCTTAGTAGTTACAGTTTTATTAAATTTTGTTGTTTTTATTTTGGAGTCAATATGATTAATATAAATATAT
GTATAGCAGGAAAAACAAACCATGGGTGGTTTAAAGATCCTGCAAGTGTTATTTTCTTGTTTTTTGTTTTGGAATAATCTCATCAAACAT
ACAATATAGTATACTATATATGTTTATTTATTTTTTTGTTGCTAAGAAAGCAATTGTACAAATTCACAGTAAATACTGCTTTTGGTTTAC
TCAAATGTGTTGCAAAATTGTTATTTTTTAAATTTGTTTTATATTTTAAACAGAATTATTGTTTTACAATGAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
IAA	Aux/IAA protein	Auxin transcriptional regulator

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	6
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	35	AUX_IAA	280
2	22040	AUX_IAA	103
5	56303	AUX_IAA	94
1.1	101391	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983)	341
2	118483	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983) AUX/IAA protein - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription (GO:0045449)	92
5	128999	Aux/IAA_ARF_dimerisation - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of translation (GO:0006445) - Molecular Function: protein dimerization activity (GO:0046983) AUX/IAA protein - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription (GO:0045449)	71

Preceding Unigenes (1)

Unigene	Build
SGN-U245363	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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