Sol Genomics Network

Unigene SGN-U271113

Unigene Basic Information

Unigene ID:	SGN-U271113
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271113
mRNA sequence:	Length: 2034 bp

>SGN-U271113 Solanum tuberosum #4 (15 members)
CATTCTTGTTCTTTGTAGTGTTGGTGGTGTGCAAAGTCAGTCTATCACTGTTGATAGGCAAATGAGAAGATATGATGTCCCAAGACTTGC
TTTTATTAATAAACTTGATCGGATGGGGGCAGACCCTTGGAAAGTTCTTAACCAGGCAAGATCAAAGCTTCGGCATCACAGTGCTGCTGT
GCAAGTTCCGATTGGGCTAGAAGATGACTTCAAGGGTCTTATTGATCTCGTGCAGTCAAAAGCTTACTATTTCCATGGTTCCAATGGTGA
GAAGATTGTCACAGAAGATATTCCTGCTGATATGGAAGCAATTACTTCTGAGAAGCGGCGAGAGCTAATTGAAGCAGTCTCTGAGGTTGA
TGATAAGCTTGCTGAATCATTTCTGAACGATGAGCCTATATCATCTGCTGATCTTGAGGCAGCCATAAGGAGAGCGACAATAGCACGGAA
GTTTGTTCCTTTTTTTATGGGTAGTGCTTTCAAGAACAAGGGAGTTCAAACACTTCTTGATGGCGTTCTCAGTTACTTGCCTTGTCCAGT
TGAAGTTAGCAACTATGCTCTGGATCAAACAAAGGACGAAGAGAAGGTTACCTTAACCGGAAACCCTTCTGGCCCTTTGGTTGCCTTGGC
ATTTAAATTAGAGGAAGGGCGTTTTGGTCAATTGACCTATTTAAGAATCTATGAAGGTGTCATCCGGAAGGGCGATTTTATAATCAACGT
GAACACGGGAAAGAAGATTAAGATTCCTCGTTTGGTTAGAATGCATTCAAATGAGATGGAGGATATCCAAGAGGCTCATGCTGGGCAGAT
AGTTGCTGTGTTTGGCGTAGATTGTGCCTCAGGGGATACTTTTACTGATGGATCAGTCAAATACACTATGACTTCTATGAATGTCCCTGA
ACCAGTGATGTCATTAGCTGTTTCACCTGTTTCTAAAGACTCTGGTGGACAATTTTCCAAAGCTTTGAATCGTTTTCAGAAGGAGGATCC
TACATTCCGTGTGGGTTTAGATGCTGAGAGTGGTGAGACAATCATATCTGGCATGGGGGAGCTGCATCTGGACATATATGTTGAGCGCAT
CCGGAGAGAATATAAGGTTGAAGCTCAGGTTGGAAAGCCTCGTGTAAACTTCAGGGAAACCATCACTAAGCGAGCAGATTTTGATTATCT
ACACAAGAAGCAAAGTGGTGGGCAAGGTCAATATGGTAGAGTAATTGGGTATGTTGAACCTCTTGAACCAGGTTCAGGCAGTAAGTTTGA
ATTTGAGAACATGCTTGTTGGACAAACTGTTCCGTCAAACTATGTCCCTGCAATTGAAAAGGGTTTCAGGGAGGCTGCCAATTCGGGTTC
TCTGATTGGTCATCCTGTTGAAAATATCCGTGTTGTTTTGACGGATGGTGCCTCACATAATGTTGATTCAAGTGAACTTGCATTCAAATT
AGCTTCTATTTATGCTTTTAGACAGTGTTATACTGCGGCCAAGCCTATCATTTTAGAACCTGTGATGCTGGTGGATATAAAAGTGCCAAC
AGAATTTCAGGGCACTGTTACTGGGGATATCAATAAGAGGAAAGGTGTCATAATCGGCAATGACCAGGAAGGAGATGACTCTGTAATTAC
TGCCAATGTTCCTCTCAACATGATGTTTGGGTACTCAACATCTCTTCGATCAATGACACAGGGGAAAGGTGAGTTCACAATGGAATACAG
AGAGCATGCCCCAGTTTCAGGAGATACGCAAACGCAACTTGTTAACGCATACAAGGCCAGCAAAGAAAGTTGAAAAGATGGTGTGCCTTT
GAAGCTCCTGCAACTACATCCTGTTTAATTATTTTTTTTATGAATTTGTCTCCTTGGGTGGGAGCAATGTTGTGAAATCCTTAGGACCAG
AATTGGTCAGTCAATTTTGATATGCTGAATAAAACAATAGCATTCCATAATGTATACAAATAATTGCTTATATACATACATATAGGTTGT
GTATTCCAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAANCTCGAGGGGGGGCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	23156	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha IF2 tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	15
5	57231	EFTU_D2 PrfC Small_GTP LepA ProtSyn_GTPbind EF1_alpha IF2 tRPa TEF_SelB EF-G EFG_C aEF-2 EFG_IV EF-Tu	15
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	119664	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation elongation factor G - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	13
5	129999	Elongation factor Tu domain 2 - Molecular Function: GTP binding (GO:0005525) Elongation factor G III and V Translation elongation factor G - Molecular Function: translation elongation factor activity (GO:0003746) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) - Biological Process: translational elongation (GO:0006414) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) Translation factor Elongation factor G C-terminal - Molecular Function: GTP binding (GO:0005525) Elongation factor G domain IV - Molecular Function: GTP binding (GO:0005525) Protein synthesis factor GTP-binding - Molecular Function: GTP binding (GO:0005525) - Biological Process: protein biosynthesis (GO:0006412)	13

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U245724	Solanum tuberosum #3
SGN-U254980	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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