Sol Genomics Network

Unigene SGN-U271616

Unigene Basic Information

Unigene ID:	SGN-U271616
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271616
mRNA sequence:	Length: 1237 bp

>SGN-U271616 Solanum tuberosum #4 (11 members)
CAAAGTAGTCGGAGTGAGGCCGGCAGGCGTAGACGTATTCGGGTCGGGCCCGCCGACAAGAGGAAAAATTCAATTTTGGTACCAACTATA
TCAGTATATGTTAGTATCAGATATTCTGTCCTTCTTGATCATTTCTAACAGTACGAAGATTTGCCATTGATATGGCAGGGAGCGGGGAGG
AATCAAAGAAGTTGCAGCTCTACTCATATTGGAGGAGTTCATGTGCATTTCGTGTTCGAATAGCTCTTAATTTGAAAGGATTGGATTATG
AGTATAAAGCTGTTAACTTGCTTAAAGGAGAACAAAGGGACCCTGAATACTTGAAGCTGAATCCCCTTGGATATGTGCCAACATTGGTGG
ATGGAGATGCAGTAATAGCTGACTCTTTTGCTATCTTAATGTATCTGGAAGAGAAGTATCCCCAGCGAGCATTGTTGCCTCAGGATTGTC
AGAAAAGAGCAATCAACTATCAGGCTGCAAACATTGTTGCGGCAAACATTCAGCCTCTACAGAATCTTGCTGTACTTAAGTACATCCACG
AAAAAGTTGGCCCTAATGAGACAACCCCTTGGGTTCAAAGTCATATAACAAAAGGCTTTGAAGCACTTGAAAAGCTACTTAAAGATTATG
CTGGAAAGTATGCAACAGGAGATGAAGTTTACATGGCCGACTTGTTTCTGGCACCTCAGATCCATGCGGCAATCAAGCGTTTTGAAGTTG
ACATGAATCAATTCCCTACTCTGTTGAGGGTATTTGAGGCTTACCAAGAGCTGCCTGCTTTCCAGGATGCTATGCCAGAAAAACAGCCTG
ATGCCACATGCTGAGGCAAGAATCTGAGGCCATCCATCTTCTTTCTCAAACCATTGGCATAACTGCTGGACTTGAATTTTGGCAGAATTG
TTAACTGTTTGCTGCACATTCTATTTCTGAAGGCATTGCCTTTTGTAAACTTCTTTACGATGAATAAATGTAGAGCTGTGTAACACTAGC
AAACTTCTTTACGATGAATACATGTAGAGCTGTGTAACACTTGCAAACTTCTTTACAATGAATAATGTAGAGCCGTGTAACGCTTCAGTT
ATGGCGCAGTCATGAGCTACTGAAGTCAGATGGTGTTGTACCTATGTTAAGGAGCCGAGGATGAACATTCCTTGGTCTCTGTTGTGATTT
GTGAGATATTATAAAGTTGTCTGCATGTTGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	29	Mal_ac_isom	300
2	22890	Mal_ac_isom GST_Nterm	18
5	57079	Mal_ac_isom GST_Nterm	17
1.1	101396	Thioredoxin-like fold Glutathione S-transferase C-terminal-like	299
2	119813	Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Maleylacetoacetate isomerase - Molecular Function: catalytic activity (GO:0003824) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aromatic amino acid family metabolism (GO:0009072) Glutathione S-transferase N-terminal Thioredoxin-like fold	12
5	130279	Thioredoxin fold Glutathione S-transferase C-terminal Glutathione S-transferase C-terminal-like Maleylacetoacetate isomerase - Molecular Function: catalytic activity (GO:0003824) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: aromatic amino acid family metabolism (GO:0009072) Glutathione S-transferase N-terminal Thioredoxin-like fold	11

Preceding Unigenes (1)

Unigene	Build
SGN-U246584	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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