Sol Genomics Network

Unigene SGN-U271622

Unigene Basic Information

Unigene ID:	SGN-U271622
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271622
mRNA sequence:	Length: 1557 bp

>SGN-U271622 Solanum tuberosum #4 (13 members)
TCTCTGAGGAGCAGTAGTGAGGTAAGTGAGAGAAGAATCACATGCAATGAGCGCCTGCAAAACCCTAGTTCGCTCTTCAATTTCCTTTTT
TCAGTTTCAAACGCGAAGCAGCTACCGGAGAAGTTTTTATTTTCACATTTCATCCAATTTTTCTTCTTTCCGGCCGCTGCCTCTACTCTC
TCTTAATCCAGCATTCAGAATCGAACCGTGTAGAGATCCTTCAAGACGATATGGCAGCACTCAAGGAGCAATTTCACTGGAAACGTCAGA
AGAAATGGCAGTTCCGCGTGTTGCCGCTGAAAGTCCGGGGGAAAAATCCAAAGACACAGTAGAGGAGTTACTGTACAACAAAGATGATGT
CTCAAAGCTGATGAAAATGGAACGCAGGCCTGATACTGAAGGCCTGGGTCATCAGGAGCGTTGGTTTCCATATTTGGATAAAGTTAAGGC
GGGAAGTATGTATTTGAGTAGTTCGGAGATATTGGAAGCAGTGACCCCGTATATAATGGATTCGAGGAAAGAGAGGTTTCGCCATGCTGT
AAAGAATCGGACATATTCAGTATGTCTGGTGGTTGAAGGTTTGAGTGATTTTGGCAATGTGTCAGCTACATTTCGCTCAGCTGATGCACT
GGGCATTCAATCAGTCCATGTTGTAGCTTGTGATAGTTCAAAAAGGTACAGGGAGAATCGACATGTTAGCATGGGAGCTGAGAAATGGTT
GGATATCGAACTATGGGATTCTGTTCATGAGTGCTTCAAAGTTTTGAAATCACGTGGTTATCGCATTGCAACAACACATCTTGGAATGGA
CACGGTTTCTGTGTATGATATGGACTGGTCATGCCCAACTGCAATTGTTGTGGGAAATGAACTTAGGGGAATAAGTGACGAGGCTCTTGG
ATCATCAGACTTGCACTGCAGTATTCCAATGAAAGGCATGGTAGACTCATTCAATGTTTCTGTTGCTGCTGGCCTTCTTATGCACCATGC
CGTCTGTGACAGAACTTCTCGCTTGGGATGCCATGGGGATCTAACTAGTGAGGAAAGTCGAATCTTGCTAGCAGAGTTTTCTTTGCGCCA
CAACGATAATGCAATTAGAATTGCTCAAGAATATGCAGAAAGAAAGATAGCTGAACTTAAATCAAAGCTTTGAGTAAGTGGTCAAACTAG
TTTTAGAAGGAAGATGTGCCTATTTGCACAAAGCGCCAGGTCCATGTATATGGCTATATGCCCAGACATTTCAACAACTGAGCAGCTGAG
CGTTTGCGTTTTGTTCTGGTGCAGCTTATGTATAGTAAAATTTTACTCCTGTTTTTTTTTTTTTACATTGAACAGCCATATTTAAGTATC
AACGGTTTATTTTATTTGTTAATTTCATAGACAATAACTCACAAAAATGTTGAGGATTCTGCTGGAAGTTTACCTGATTTAGTTGTCTTT
CCTACTCTTTTAGATTTGCGCTCTCATGTTTAGGAGGGGTTAATGTATTTGAACTATATCACCATTTTTGAAAGACTTAATAACATATTT
GTCTAAAAAAAAAAAAAAAAAACTCGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	2
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1

mRNA member sequences (13)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1173	SpoU_methylase	16
2	26945	rRNA_methyl_1 rRNA_methyl_2 rRNA_methyl_3 SpoU_methylase	4
5	63466	rRNA_methyl_1 rRNA_methyl_2 rRNA_methyl_3 SpoU_methylase	3
1.1	102520	tRNA/rRNA methyltransferase SpoU - Molecular Function: RNA binding (GO:0003723) - Biological Process: RNA processing (GO:0006396) - Molecular Function: RNA methyltransferase activity (GO:0008173)	13
2	123791	tRNA/rRNA methyltransferase SpoU - Molecular Function: RNA binding (GO:0003723) - Biological Process: RNA processing (GO:0006396) - Molecular Function: RNA methyltransferase activity (GO:0008173)	4
5	133966	tRNA/rRNA methyltransferase SpoU - Molecular Function: RNA binding (GO:0003723) - Biological Process: RNA processing (GO:0006396) - Molecular Function: RNA methyltransferase activity (GO:0008173)	4

Preceding Unigenes (2)

Unigene	Build
SGN-U247531	Solanum tuberosum #3
SGN-U249243	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer