Sol Genomics Network

Unigene SGN-U271923

Unigene Basic Information

Unigene ID:	SGN-U271923
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271923
mRNA sequence:	Length: 1414 bp

>SGN-U271923 Solanum tuberosum #4 (12 members)
AAGTGTCAAGTACTACTCTGTTAACTTACAAAGTGCTTCCCATTAATGGAAAATGGGGAAGATGGCATCTTCCTTCATTTCTTCCTTTAA
TTTCTCTTCCTATTCCAAATCTGTTGCTCTGTTTGCATCACTCTACAGTCTTTATTTCCTCTTGATTTCTGCAAATGTGAGTGGATTTGA
GTCACTCTTACAGCTCCTTCCAGCATCTGCTTCTTTGAGGAGCAAATCGGAATCTCTTTTTCAAGTCAACGATTTTGGAGCTGCCGGAGA
TGGGATTACCGATGACACTAAGTCTTTTAAAGATGTTTGGGATATGGCCTGCTCTTCACCATCACATGCAAAGATTGTCATCCCTGCTGG
TTATTCTTTCTTAGTTCGACATATTAATTTTGCTGGTCCTTGCCGGTCAAAGGTGTCTATACGGATTGCAGGTACTATTTTAGCACCAAA
GGATCCTGAAGTCTGGGATGACTTGAATCCACGAAAATGGCTCTATTTCTTTAGAGTAAAACACCTGACAGTAGAAGGAGGAGGAATTAT
AAATGGTATGGGCCAGGAGTGGTGGGCTCGGTCATGCAAGGTCAACAGAACAAATCCTTGTCATCATGCTCCAACGGCTTTAACTTTCCA
CAAATGCAACAACCTCAAAGTCAAAAACATTGTGTGTGGGCCAGGCCATGGTATAAGCATTGGAAGCTTGGGAAAGTCATATTCATTTTC
TCAGGTTTACAATGTTCATGTTAACGGAGCATCTATTTCCAACACTGAGAACGGGGTTAGAATAAAGACTTGGCAGGGTGGTTCTGGGTT
TGTCAAAAAGGTTTCTTTCGAGAATGTTTGGATGGAAAACGTCTCAAATCCTATCATAATCGACCAATATTATTGTGATTCTACGAAACC
CTGTTCAAACAAGACTTCAAATATTCGCATTGACAGCATATCCTTTATGGGTATTAAAGGAACTTCAGCTACAGAAAGGGCAGTAACACT
TGCCTGCAGCGATAGCTTCCCCTGCAGAAAGTTGTACTTGGAAGATATTCAACTTACTTCATCTTCTGGGGATCCTACAACATTTTTTTG
CTGGCAGGCATATGGCACAACCTCAGGTTTAAATTATCCCCCTCCTTGCTTTCCCTGTAATGACGGCATTCTTCAGCCAAAATTTTTATC
TAACTGGAGTCAATCGATTTGATGTCTTCTATTCTAATTGTACAAATGCCTGGACCATATATCAGTTGAAAGCTGCTAAATTAATTGTCA
TTGATATTCGTTATCCTGAGCAAATCTAGTTAACTTATCAAGCAGGTGGAACAGTTTGGTCCACAAATACTGATGAGTAGCTTGTCCAAG
TACTGATGTTTATTGAAGAAAATTTGAGAGTTGATTAATGGATCTTTATTCTTCAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	76	Glyco_hydro_28	160
2	22051	Glyco_hydro_28	95
5	56305	Glyco_hydro_28	94
1.1	101443	Virulence factor pectin lyase fold Glycoside hydrolase family 28 - Molecular Function: polygalacturonase activity (GO:0004650) - Biological Process: carbohydrate metabolism (GO:0005975)	154
2	118479	Glycoside hydrolase family 28 - Molecular Function: polygalacturonase activity (GO:0004650) - Biological Process: carbohydrate metabolism (GO:0005975) Virulence factor pectin lyase fold	94
5	128973	Glycoside hydrolase family 28 - Molecular Function: polygalacturonase activity (GO:0004650) - Biological Process: carbohydrate metabolism (GO:0005975) Virulence factor pectin lyase fold	93

Preceding Unigenes (1)

Unigene	Build
SGN-U245667	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Start Date:
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