Sol Genomics Network

Unigene SGN-U272048

Unigene Basic Information

Unigene ID:	SGN-U272048
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272048
mRNA sequence:	Length: 1618 bp

>SGN-U272048 Solanum tuberosum #4 (12 members)
TACACAAACACCAAAACTTCTTAAGAAAATGTCTTCTTATTCAGAGCTATCAAATCTACCGATTCGCGAAATTCCAGGGGACTATGGTTT
CCCTATAATTAGCGCGATTAAAGATCGATACGATTATTTCTATAACCAAGGTGAAGATGCTTGGTTCCATAACAAAGCTGAAAAATACAA
ATCTACTGTTGTCAAAATCAACATGGCACCAGGTCCATTCACATCTAATGACTACAAATTGGTAGCATTTTTAGATGCCAATAGCTTTGT
TTGCATGTTTGATAATTCCCTCATCGATAAAACTGACACTCTTGGTGGTACATTTAAGCCTGGTAAAGAATACTACAGTGGTTATCGTCC
CGTTGCGTTTATCGATACGAAAGATCCAAACCATGCAGCATTAAAAGGCTACATTCTATCAGCGTTCGCAAAGCGACATAACTTATTCAT
TCCTCTATTCAGAAACTCATTATCTGATCATCTTTTTAATAATCTCGAAAAACAGGTTACTGAACAAGGGAAATCGGATTTCAACGCCTT
GCTTCCAACTATGACGTTTAATTTCATTTTTCGTTTGCTTTGTGATCAGACTAATCCGTCTGATACAGTTCTTGGCGCTCAAGGACCAGA
ACATCTACGTAAATGGCTTTTCCCTCAGCTAATTCCGTCCTTGAGCGCTAAGAAACTTCCTAACATCATAGAAGATACGCTCTTCCATAA
TTTTTTAATACCATTTGGTTTTATAAAAAGTGATTACAACAAACTTGTTGATGCATTTAGCAAGTCCGCTGTGTCCATATTGGATGAAGC
GGAAAAACTTGGAATCAAAAGAGAAGAAGCTGTACAAAACATTCTTTTTCTCGTGGGGATCAATATGTTCGCTGGCTTGAACGCCTTTTT
CCCTCATCTCTTCAGGTTTGTGGGAGAAGCAGGGGCTAGTCTACACACACAACTTGCTAAAGAAATAAGGACCGCTATTAAAGAAGAAGG
TGGTGCAATCACATTATCAGCGATTAACAAAATGAGTTTGGTCAAGTCCGTAGTGTATGAAACATTGAGGCTTCGCCCACCAGTACCTTT
ACAGTATGGTAAGGCGAAGAAAGACTTCATGGTTCAAAGCCACGATGCATCTTACAAGATCAATAAAGGGCAATTCGTCGTTGGATATCA
GCCTATGGCTAGTAGGGACCCTAAGATTTTCGCAAACCCTGATGAGTTTGTTCCTGATAGGTTCATGAATGATGGTGAGAAAATGCTGAA
ACATGTTCTATGGTCTAATGGAAGGGAAACAGAGAATCCAGCACCAGATAACAAGCAATGTCCAGGCAAAGATTTGGTGCACCTATTGGG
TAGGTTAATATTGGTTGAGTTTTTCATGAGATACGATACGTTCACCGTCGAAATTACACCTCTATTTCGTGCACCAAATGTTGCCTTCAA
GACGTTAACCAAAGCGAGTAAATAGTTTTCTATGTGATCAAAGTGTGTGCGCGCGCACATTGAATTTCATTAATTTGTATTGTGTTGTAT
TTTTTTTAAAAAAGTTGTTGACTCGGTCACTTTCTCGGCATGTCTTTGAAACTTTAAGGTAACATAAGCTATAAATTTAATAAAAAAG

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
aos3	allene oxide syntase	allene oxide syntase
des	divinyl ether synthase	divinyl ether synthase

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	5
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	525	Cytochrome_P450 EP450IV	34
2	22360	Cytochrome_P450 EP450IV	33
5	56555	Cytochrome_P450 EP450IV	32
1.1	101962	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	27
2	118907	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	26
5	129313	Cytochrome P450 - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037) E-class P450 group IV - Molecular Function: monooxygenase activity (GO:0004497) - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: heme binding (GO:0020037)	26

Preceding Unigenes (2)

Unigene	Build
SGN-U247987	Solanum tuberosum #3
SGN-U250337	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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