Sol Genomics Network

Unigene SGN-U272755

Unigene Basic Information

Unigene ID:	SGN-U272755
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272755
mRNA sequence:	Length: 1520 bp

>SGN-U272755 Solanum tuberosum #4 (10 members)
CGGGCCCCCCCTCGAGACTAGTTTCTCTCTCTCCTGGCCTCTACTGATGGTCACAAAAGGTATATTTGAAGGTGGTTTGGATGCTACAGT
CAGGGGTGGACATGAGGAGTACGAAGAGGCTGCAGATGCTGATTGGGGTGAGTCACTGGATATTGGTGAGGTGGAAAATCTGCAGAATGG
GGATATCAGTATGGTGCTGGAGGATGAAGAAGGAAAAGAAGAAAATGACGAGGAAGGAGGATGGGATCTTGAGGATTTGGATCTGCCACC
TGATACTGACACACCAAAGACTGCTTCCAATGCCCGCTCTTCTGTTTTTGTTACCCCAAACCCTGGCATGCCTGTCAGCCAGATTTGGGT
CCAAAAATCATCTCTTGCTGCAGAACATGCAGCTGCTGGCAATTTCGATACTGCTATGCGTTTGCTGAGCCGACAACTAGGGATTAAGAA
CTTCTCTCCATTAAAGCAATTGTTTGCTGATCTTCATATGGGAAGCCATACATATCTCCGTGCCTTCTCCTCGGCACCAGTTATCTCTCT
GGCAATCGAAAGAGGGTGGAGTGAGTCAGCTAGTCCCAATGTGCGGGGTCCACCTGCCCTCATCTTCAATTTCAGTCAGCTGGAAGAAAA
ACTTAAAACTGCCTATAGAGCCACTACTTCTGGGAAATTCTCTGATGCTCTTAGATTATTTCTGAGCATTCTTCACACCATTCCTTTAAT
TGTGGTTGAGTCAAGACGAGAGGTGGATGAGGTCAAGGAATTGATTGTCATAGTGAAGGAGTACGTTTTAGGTTTGCAGATGGAGGTTAA
GAGGAAGGAATCAAAAGATAACCCCGTTCGTCAGCAGGAGTTGGCTGCCTACTTCACACACTGTAATCTGCAGCTTCCACACTTGAGACT
CGCATTACAGAATGCTATGTCTATCTGCTATAAGGCAAGCAATCTCAGCTCAGCAGCCAACTTTGCTAGGAGACTGTTGGAGACAAATCC
AACCAATGAAAGCCAAGCAAAAACAGCCCGCCAGGTTCTTCAAGCAGCTGAGAAAAATATGAGAAATGCTACAGAGTTGAATTATGACTT
CAGAAATCCGTTTGTGGTCTGTGGCGCTACATATGTCCCCATATACAGAGGCCAGAAGGATGTCACTTGCCCTTATTGTACTACTCATTT
TGTTCCATCCCATCAAGGACAGCTTTGTACTGTTTGTGATCTTGCAGTTGTAGGAGCAGATGCCTCTGGCTTGCTTTGCTCACCTTCACA
GGTCAGATAATTTCAGTTTTTAAAATCAGCTCTTTTGGCCATCGTTTCAGAAGCTTCCGGTTCTACATTAGAAGTTAGGGATGAGTATTG
ACAGGCCTGCTTTTGATCGGATTGTACCTGTGGTTTATATTTGTTTTGATTTTTGCAATAGTTTTATGAACCTAATTGCCCTTCTTTATA
AGTTCTATGGTTACAATTTTGATTGTAATAAAGTTTCATGTAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	2
Solanum tuberosum	CSCH	Tubers	5038	3
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	6	WD40	833
2	22882	Coatomer_WDAD WD40	18
5	56964	Coatomer_WDAD WD40	19
1.1	101368	WD-40 repeat	806
2	119248	Coatomer WD associated region - Biological Process: intracellular protein transport (GO:0006886) - Molecular Function: protein transporter activity (GO:0008565) WD-40 repeat Coatomer alpha subunit C-terminal - Biological Process: intracellular protein transport (GO:0006886) - Cellular Component: COPI vesicle coat (GO:0030126)	18
5	129591	Coatomer WD associated region - Biological Process: intracellular protein transport (GO:0006886) - Molecular Function: protein transporter activity (GO:0008565) WD-40 repeat Coatomer alpha subunit C-terminal - Biological Process: intracellular protein transport (GO:0006886) - Cellular Component: COPI vesicle coat (GO:0030126)	18

Preceding Unigenes (2)

Unigene	Build
SGN-U250139	Solanum tuberosum #3
SGN-U262146	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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