Sol Genomics Network

Unigene SGN-U273022

Unigene Basic Information

Unigene ID:	SGN-U273022
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	273022
mRNA sequence:	Length: 1038 bp

>SGN-U273022 Solanum tuberosum #4 (9 members)
AAAACTTTGAGCTAAGCACCCTCTAAATTCCAAGCTAGCACCACCATTCCTTTTCTTTCTCTCTCACCACCATATGCCTATGGCCAACAA
ACCTGTACCCCAAATAAAGTAAATTGAACCGTTGCCCACTTTCCTATTATACTATTAATATGTAAAATAAACTATACTAGAACTACTACT
TGCAACTTTCTCTCTTAGCTGCTTTCTCTGTTTTTTGCTTTCTTGCTCTCTTTTCACCTCATTTTTTTCTTTGTTCTATCCATATAATGT
AATTTGCACACAAAAAAAGAACATTTTCTTGAATCTTTATTGTAAAAACATCTTCAAAGTTTTGATCTTTACTTACTTTGAACTTCAATG
GCTTCTTCTTCTTCTTCTACTACTACTACTTGGTCTTTCTTAATTACCCTTATCTGCATTTTCTTGTTTATGGGGTTAAGTTTTGCTGGA
GATCCATTTAAGTTTTTTAACTTTGAGGTCTCTTACATTGATGCTTCTCCACTTGGGGTGTCTCAACAGGTTATTGCTATTAATGGAAAG
TTTCCTGGACCAACTATGAATGTAACTACTAATGACAATGTTGTTGTTAATGTGAGGAACAAATTAGATGAAGAACTTCTCTTACATTGG
TCTGGGGTTCAGCAGAAGAGGAGTACCTGGCAAGATGGTCTACCAGGAACAAACTGTCCTATTCCTCCAAAGTGGAACTGGACTTACCAA
TTTCAGGTCAAGGACCAAATTGGAAGTTTCTTTTATTTCCCTTCTCTGCATTTTCAGAGAGCATCAGGGGGTTTTGGTGGAATTACTATT
AATAACAGGGAGGAAATCCCAATTCCTTTTGATTTACCATATGATGATATAACTATTATGATTGGTGATTGGTACACCAGAAATCACACG
TCTTTGAGGAGCACTCTTCTTGCTGGCAAAGATCTAGGAAAACCAGATGGTGTTTTAATTAATGGAAAAGGTCTTACAGATATAATGATA
CTATTGTGCCCTGATGGGCATTGACTATGAAACAATCACTGTCCATCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 1 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	69	Cu-oxidase CopA	171
2	22032	Cu-oxidase CopA	115
5	56295	Cu-oxidase CopA	109
1.1	101438	Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507)	162
2	118466	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	111
5	128966	Multicopper oxidase type 1 - Molecular Function: copper ion binding (GO:0005507) Multicopper oxidase type 2 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Multicopper oxidase type 3 - Molecular Function: copper ion binding (GO:0005507) - Molecular Function: oxidoreductase activity (GO:0016491) Cupredoxin	105

Preceding Unigenes (1)

Unigene	Build
SGN-U246660	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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