Sol Genomics Network

Unigene SGN-U277726

Unigene Basic Information

Unigene ID:	SGN-U277726
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	277726
mRNA sequence:	Length: 2086 bp

>SGN-U277726 Solanum tuberosum #4 (467 members)
CCCAAAAAGCCTTAATGGAGCATTTGCTTCCTCGGCTATAAAGTATCAGTCTCTGCATTTGTAAAACCCTAAACGCTTCGCTTATTTGTT
TTGCGCATTCTTCTTCAGCTGTGCCGCATATCGCCTAATTTCTCTTCTCTAAGTTTCTTAGTCTCTCAAGATGGGTAAAGAGAAGATTCA
CATCAGCATTGTGGTCATTGGCCACGTCGACTCTGGAAAGTCGACTACCACTGGTCACTTGATCTACAAGCTTGGTGGAATTGACAAGCG
TGTTATTGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAACTTAAGGCTGAACG
TGAGCGTGGTATCACCATTGATATTGCTTTGTGGAAGTTTGAGACCACTAAGTACTACTGCACTGTGATTGATGCCCCCGGACACAGGGA
CTTTATCAAGAACATGATCACTGGTACCTCCCAGGCTGACTGTGCTGTCCTCATTATTGACTCCACCACTGGTGGTTTTGAAGCTGGTAT
CTCTAAAGATGGTCAGACACGTGAACATGCATTGCTTGCTTTTACCCTTGGTGTCAAGCAAATGATTTGCTGCTGTAACAAGATGGATGC
TACCACCCCCAAGTACTCCAAGGCTAGGTATGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTCGGTTACAACCCTGACAA
AATCCCATTTGTCCCCATCTCTGGTTTTGAAGGAGATAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGACCAACCCTCCT
TGATGCTCTCGACCAGATTAATGAGCCCAAGAGGCCAACAGACAAACCCCTCCGTCTTCCACTTCAGGATGTTTACAAGATTGGTGGTAT
TGGAACTGTCCCTGTTGGTCGTGTTGAGACTGGTGTGATCAAGCCTGGTATGGTTGTGACCTTTGGCCCTACTGGTTTGACAACTGAAGT
CAAGTCTGTTGAGATGCACCACGAAGCTCTTCTGGAGGCACTCCCTGGTGACAATGTTGGGTTCAATGTTAAGAATGTTGCTGTTAAGGA
TCTGAAGCGTGGTTTTGTTGCCTCAAACTCCAAGGATGACCCAGCTAAGGGGGCAGCCAGCTTCACTGCCCAGGTCATCATCATGAACCA
TCCTGGCCAGATTGGAAATGGATATGCTCCAGTGCTCGACTGTCACACTTCCCACATTGCTGTCAAGTTTGCTGAGATCTTGACCAAGAT
TGACAGGCGTTCAGGTAAGGAACTTGAGAAGGAGCCTAAGTTCTTGAAGAACGGTGATGCTGGTATGGTTAAGATGATTCCCACCAAGCC
CATGGTTGTTGAGACCTTTGCTGAATACCCACCATTGGGTCGTTTTGCTGTGAGAGACATGAGGCAAACTGTTGCTGTCGGTGTTGTCAA
GAATGTTGACAAGAAGGACCCAACTGGTGCCAAGGTGACCAAGGCTGCCCAGAAGAAGGGAAAGTGAACAGTGCAGTGTGATGCTGGTGT
TTCCAATGCTATTTATTTTCATCGAGTGTGCTATCTAGACTCTGTTTTATTTAGTTCTGCTTTAGTTTGGTCTTTGATTTGCTTATTAGG
TTCTAGTTCTCTGCCTTGTATGTCAAGTACTCATTCTCAGAACTGGGTACTTGATAGGCGGTGGCGAGCATGATTTTGAGTCTGTTTTCT
TTTGCTTTTGTTGAAGTGCCATGGTTTGTTTTCCATGGTGGCTCAGGATTTTTGTTGTTGGTGTTTGCCTAAATTTGAGATCCAAGTTTT
CTACTCAAAAAAAAAAAAAAAAAAAAAAAAATACTTCACTTTTGCTAAAGGTGGTAATTTGATTTTAATAGCGCAGTTCTATAAAGGTGG
GATCAAGTTCAGCCTTAAGGATTTGTATAGGTGAGTGATTTTGTACATGGTAATTCGAAATGGTGAATTGAGGTGANGTGTAGAGTAGAT
TGAACTTGCACCAATAGCGGCACTTTGGCGCTGTAGATTGATTTGAAAGGCAGCCAGNTTAATGTGTATCATTATGTATGTATTGATTGT
TTGATCGNGTAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
DQ284495	elongation factor-1 alpha
ef1a	Elongation factor 1-alpha

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	24
Solanum tuberosum	ACDC	Sprouting Tubers	5177	15
Solanum tuberosum	CSCH	Tubers	5038	18
Solanum tuberosum	CSWB	Tubers	6124	6
Solanum tuberosum	IVROOT	Root	5850	19
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	10
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	14
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	3
Solanum tuberosum	STM	mixed tissues	14805	20
Solanum tuberosum	STOL	Stolon	6462	34
Solanum tuberosum	SWST	Stolon	5942	30
Solanum tuberosum	TBSK	Tuber Skin	4812	6
Solanum tuberosum	TUBS	Tubers	5976	6
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	34
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	71
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	17
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	2
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	23
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	56
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	53
Solanum tuberosum	vSTmRNA		708	2

mRNA member sequences (467)

Alignment image suppressed for unigene with 467 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	50	ProtSyn_GTPbind	231
2	22048	EFTU_Cterm	97
5	56339	EFTU_Cterm	71
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118470	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	104
5	128992	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	75

Preceding Unigenes (3)

Unigene	Build
SGN-U249422	Solanum tuberosum #3
SGN-U249423	Solanum tuberosum #3
SGN-U249428	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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