Sol Genomics Network

Unigene SGN-U281085

Unigene Basic Information

Unigene ID:	SGN-U281085
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	281085
mRNA sequence:	Length: 4163 bp

>SGN-U281085 Solanum tuberosum #4 (3 members)
TAAAAACCATTGGACATTGGAAATGGTCTGAAATGCAAGGTGTTGAACTTGTTGTCTCTGAAGACAAAAATTCAAACACCCCCACAACAA
CAACAACAACAAATAGTCATCAATTTCAAGAAACAAGAATGGAGGTTAAAAAAGAAGAAGGGGGTGATGTGGAGAAGCCAAGTAGTCCAC
CACCAGCAGTTGGTTTTGGTGAACTTTTTAGATTTGCTGATGGTTTGGATTGTGTACTAATGATAATTGGTTCACTTGGTGCTTTTGTCC
ATGGATGTTCTTTGCCTTTGTTTCTTAGATTCTTTGCTGATCTTGTTAATTCTTTTGGCTCTTATGCTAATGATGTTGATAAGATGACTC
AAGAAGTTTTAAAGTATGCATTTTACTTTCTTGTGGTGGGTGCTGCAATATGGGCATCTTCATGGGCAGAGATATCATGCTGGATGTGGA
CTGGTGAGAGACAAACAACAAAGATGAGGATCAAATACTTAGAGGCTGCTTTGAACCAAGATATTCAATATTTTGATACTGAAGTTAGAA
CTTCTGATGTTGTTTCTGCAATTAACACTGATGCTGTAGTGGTCCAAGATGCCATTAGTGAGAAGTTGGGCAATTTCATTCATTATATGG
CTACATTTTTGTCTGGATTTGTGGTGGGATTTACAGCAGTATGGCAATTAGCTCTAGTTACTCTTGCTGTAGTTCCACTTATTGCTGTAA
TTGGTGCTATCTACACTGTGACATCAGCCAAATTGTCAAGTCAAAGTCAAGAAGCACTTTCAAAGGCAGGGAACATTGTTGAACAGACAG
TAGTTCAAATTCGGACGGTATTGGTGTTTGTTGGTGAGGCAAAAGCATTGCAAGCATACACAGCAGCACTTAGAGTTTCTCAAAAGATTG
GATATAAGAGTGGATTTTCAAAAGGATTAGGACTTGGAGCTACATATTTTACTGTTTTCTGTTGTTATGCTCTTCTTTTATGGTATGGGG
GCTATTTAGTTAGACATCATTTCACCAATGGAGGACTTGCCATAGCAACAATGTTTGCAGTCATGATTGGTGGATTGGCATTGGGACAAT
CTGCCCCTAGCATGACTGCATTTGCAAAAGCTAGAGTTGCAGCTGCCAAGATTTTCCGGATTATCGATCATAAGCCAAGCGTCGACAGAA
ACGCCAAGACGGGGTTGGAGTTAGACACTGTTAGTGGCCAGCTAGAGCTTAAGAATGTCGAGTTCTCTTATCCTTCAAGGCCTGAAATCA
AGATTCTCAACAATTTCAACCTCGTTGTTCCAGCTGGAAAGACCATCGCTTTAGTCGGAAGCAGTGGTTCGGGGAAAAGCACTGTGGTAT
CCCTTATCGAAAGATTTTATGATCCCACCTCAGGACAACTTATGCTTGATGGAAATGACATAAAGACACTGAAATTGAAATGGCTAAGGC
AGCAAATTGGCCTTGTAAGCCAAGAACCAGCACTTTTCGCAACAAGCATCAAAGAAAACATACTATTAGGAAGGCCAGATGCAACACAAA
TTGAGATCGAAGAAGCTGCTAGAGTTGCCAATGCCCATTCTTTCGTAATCAAACTTCCTGATGGCTTTGATACTCAGGTAGGGGAGAGAG
GATTACAATTATCAGGTGGACAGAAGCAGAGGATTGCTATAGCAAGGGCCATGCTTAAGAATCCAGCGATCCTTCTCTTAGACGAGGCAA
CTAGTGCTTTAGATTCCGAATCAGAAAAGCTAGTGCAGGAGGCTCTAGACAGGTTCATGATCGGACGAACGACTCTTGTGATTGCTCATC
GGCTGTCTACTATCCGGAAGGCTGACCTGGTGGCTGTACTACAACAAGGCAGTGTCTCGGAGATTGGAAGCCACGATGAGCTTATGAGTA
AAGGAGAGAATGGTATGTATGCCAAGCTCATCAAAATGCAAGAAGCAGCTCATGAAACCGCTCTTAGTAATGCCAGAAAGAGCAGTGCAA
GGCCCTCGAGTGCAAGGAACTCTGTAAGCTCACCAATCATCACTAGAAACTCTTCCTATGGTCGATCACCATACTCCCGCCGGTTGTCTG
ACTTTTCTACCTCGGACTTCAGCCTCTCCCTTGATGCTGCATATTCTAATTACCGAAATGAAAAGCTTGCATTCAAGGACCAAGCTAGTT
CGTTTGGCCGGCTTGCAAAAATGAACTCTCCTGAGTGGACTTATGCTTTAATTGGTTCTATAGGCTCTGTCATCTGTGGTTCACTTAGTG
CTTTCTTTGCATACGTCTTGAGTGCTGTTCTTAGCGTGTACTACAATCCGGATCATGCTTACATGAGCGAACAAATTGCGAAATACTGTT
ATCTTTTGATTGGAGTTTCATCAGCTGCACTCATTTTCAACACTCTACAGCATTACTACTGGGATGTAGTAGGGGAGAATTTGACAAAAC
GGGTGAGAGAGAAAATGCTGGCAGCAGTGCTTAAAATGGAAATGGCGTGGTTCGATCAGGAAGAGAACGATAGTTCAAGAATTGCAGCTA
GGCTCTCTCTGGATGCCAACAATGTTAGGTCAGCCATTGGGGATAGAATCTCCGTCATTATGCAGAACTCAGCTCTCATGCTAGTCGCGT
GCACTGCAGGATTCGTATTGCAGTGGCGTCTGGCCCTCGTCCTCATTGGGGTCTTCCCCGTGGTCGTTGCAGCAACAGTTTTACAGAAAA
TGTTCATGAAGGGATTCTCAGGAGACTTGGAAGCTGCTCATGCCAAAGCCACTCAACTTGCTGGAGAAGCTGTAGCTAATGTAAGAACAG
TTGCTGCCTTTAATTCGGAGACGAAAATAGTCAATCTTTTCGACTCCAGCCTCCAAACTCCGCTTAGGCGTTGCTTCTGGAAGGGACAGA
TTGCGGGAAGTGGTTATGGGATTGCTCAATTTTTGCTTTATTCTTCCTATGCCCTTGGCCTTTGGTATGCCTCCTGGCTTGTCAAGCATG
GGATCTCTGACTTCTCGAAGACGATCCGTGTTTTCATGGTGCTCATGGTTTCTGCTAATGGTGCAGCCGAAACATTGACCTTAGCCCCTG
ACTTCATCAAGGGTGGCAGAGCAATGCGTTCTGTTTTCGAACTCCTTGACCGTAAAACAGAAGTTGAGCCGGATGATCCAGATGCCACCG
CTGTCCCTGATCGTCTTCGTGGTGAAGTGGAATTTAAGCATGTAGACTTCTCATATCCCACTAGACCCGACGTGTCAATTTTCCGTGATT
TGAATCTTCGTGCTCGAGCTGGAAAGACTCTTGCTCTTGTTGGACCAAGTGGATGTGGAAAGAGCTCAGTCATTTCACTTATAGAGCGGT
TCTACGAGCCATCATCTGGACGTGTCATCATCGATGGCAAGGATATTCGTAAGTACAACCTTAAATCCTTGAGAAGACACATTGCTGTAG
TGCCACAAGAACCTTGCCTCTTTGCTACCACCATCTATGAAAACATCGCGTATGGACATGAATCAGCAACCGAGGCTGAGATAACCGAAG
CAGCAACCTTGGCAAACGCCCACAAGTTCATATCTGCATTGCCTGATGGATACAAAACATTTGTTGGAGAAAGGGGAGTTCAATTGTCTG
GTGGACAAAAGCAAAGAATCGCCATTGCTCGTGCTTTCCTAAGGAAAGCAGAGCTAATGCTGCTAGATGAAGCAACAAGTGCACTCGATG
CAGAGTCTGAAAGATGTGTACAAGAAGCATTGGATCGCGCTTGTGCTGGTAAGACCACTATTGTTGTTGCACACAGGCTATCTACAATCA
GAAATGCACATGTGATCGCGGTCATAGACGATGGGAAAGTAGCAGAACAAGGTTCTCATTCTCATCTGTTGAAAAACTACTCAGATGGTA
TTTATGCGCGTATGATACAACTACAACGATTTACACACGGAGAAGCTGTGAATATGGCAACAGGATCAACGTCTTCCTCGCGTCCTAAGG
AAGATCAAGATTGAGAAGAAAACGCGAATTGAAGCTCAAAATGAAAAAAAATACCAGTAGAAAAAAAAAGGAGTATACCTTGTGTAACAC
CCTTATTATTTTTTGGACTGCTAATTTCTTGTTCACTGTTTTCTAGTATAGTATAGTATAATATGTGCATTAATCCAAAATTATATTTAT
CCTTCAATTTTTCCGGCCCGCTA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pmdr1	P-glycoprotein 1

Genomic locations (0)

None

Library representation (3)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P223026 (1323 Aa)

KTIGHWKWSEMQGVELVVSEDKNSNTPTTTTTTNSHQFQETRMEVKKEEGGDVEKPSSPPPAVGFGELFRFADGLDCVLMIIGSLGAFVH
GCSLPLFLRFFADLVNSFGSYANDVDKMTQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQTTKMRIKYLEAALNQDIQYFDTEVRT
SDVVSAINTDAVVVQDAISEKLGNFIHYMATFLSGFVVGFTAVWQLALVTLAVVPLIAVIGAIYTVTSAKLSSQSQEALSKAGNIVEQTV
VQIRTVLVFVGEAKALQAYTAALRVSQKIGYKSGFSKGLGLGATYFTVFCCYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALGQS
APSMTAFAKARVAAAKIFRIIDHKPSVDRNAKTGLELDTVSGQLELKNVEFSYPSRPEIKILNNFNLVVPAGKTIALVGSSGSGKSTVVS
LIERFYDPTSGQLMLDGNDIKTLKLKWLRQQIGLVSQEPALFATSIKENILLGRPDATQIEIEEAARVANAHSFVIKLPDGFDTQVGERG
LQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGSHDELMSK
GENGMYAKLIKMQEAAHETALSNARKSSARPSSARNSVSSPIITRNSSYGRSPYSRRLSDFSTSDFSLSLDAAYSNYRNEKLAFKDQASS
FGRLAKMNSPEWTYALIGSIGSVICGSLSAFFAYVLSAVLSVYYNPDHAYMSEQIAKYCYLLIGVSSAALIFNTLQHYYWDVVGENLTKR
VREKMLAAVLKMEMAWFDQEENDSSRIAARLSLDANNVRSAIGDRISVIMQNSALMLVACTAGFVLQWRLALVLIGVFPVVVAATVLQKM
FMKGFSGDLEAAHAKATQLAGEAVANVRTVAAFNSETKIVNLFDSSLQTPLRRCFWKGQIAGSGYGIAQFLLYSSYALGLWYASWLVKHG
ISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRKTEVEPDDPDATAVPDRLRGEVEFKHVDFSYPTRPDVSIFRDL
NLRARAGKTLALVGPSGCGKSSVISLIERFYEPSSGRVIIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHESATEAEITEA
ATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAIARAFLRKAELMLLDEATSALDAESERCVQEALDRACAGKTTIVVAHRLSTIR
NAHVIAVIDDGKVAEQGSHSHLLKNYSDGIYARMIQLQRFTHGEAVNMATGSTSSSRPKEDQD

SignalP predicts non-secretion with a score of 0.077

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P83947 (1323 Aa)

KTIGHWKWSEMQGVELVVSEDKNSNTPTTTTTTNSHQFQETRMEVKKEEGGDVEKPSSPPPAVGFGELFRFADGLDCVLMIIGSLGAFVH
GCSLPLFLRFFADLVNSFGSYANDVDKMTQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQTTKMRIKYLEAALNQDIQYFDTEVRT
SDVVSAINTDAVVVQDAISEKLGNFIHYMATFLSGFVVGFTAVWQLALVTLAVVPLIAVIGAIYTVTSAKLSSQSQEALSKAGNIVEQTV
VQIRTVLVFVGEAKALQAYTAALRVSQKIGYKSGFSKGLGLGATYFTVFCCYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALGQS
APSMTAFAKARVAAAKIFRIIDHKPSVDRNAKTGLELDTVSGQLELKNVEFSYPSRPEIKILNNFNLVVPAGKTIALVGSSGSGKSTVVS
LIERFYDPTSGQLMLDGNDIKTLKLKWLRQQIGLVSQEPALFATSIKENILLGRPDATQIEIEEAARVANAHSFVIKLPDGFDTQVGERG
LQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGSHDELMSK
GENGMYAKLIKMQEAAHETALSNARKSSARPSSARNSVSSPIITRNSSYGRSPYSRRLSDFSTSDFSLSLDAAYSNYRNEKLAFKDQASS
FGRLAKMNSPEWTYALIGSIGSVICGSLSAFFAYVLSAVLSVYYNPDHAYMSEQIAKYCYLLIGVSSAALIFNTLQHYYWDVVGENLTKR
VREKMLAAVLKMEMAWFDQEENDSSRIAARLSLDANNVRSAIGDRISVIMQNSALMLVACTAGFXIAVASGPRPHWGLPRGVAATVLQKM
FMKGFSGDLEAAHAKATQLAGEAVANVRTVAAFNSETKIVNLFDSSLQTPLGVASGRDRXAGSGYGIAQFLLYSSYALGLWYASWLVKHG
ISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRKTEVEPDDPDATAVPDRLRGEVEFKHVDFSYPTRPDVSIFRDL
NLRARAGKTLALVGPSGCGKSSVISLIERFYEPSSGRVIIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHESATEAEITEA
ATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAIARAFLRKAELMLLDEATSALDAESERCVQEALDRACAGKTTIVVAHRLSTIR
NAHVIAVIDDGKVAEQGSHSHLLKNYSDGIYARMIQLQRFTHGEAVNMATGSTSSSRPKEDQD

SignalP predicts non-secretion with a score of 0.077

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	16	ThiQ_ABC_transpt ABC_transporter Sulph_transpt1 CbiN_ATP	404
2	22086	NtrCD ThiQ_ABC_transpt ATP_GTP_A_BS Drr_ABC_transpt ABC_transporter CcmA ProV Phosp_transpt1 IISP Sulph_transpt1 Sp/ptABC_transpt CbiN_ATP ABC_transptNodI	74
5	56338	NtrCD ThiQ_ABC_transpt ATP_GTP_A_BS Drr_ABC_transpt ABC_transporter CcmA ProV Phosp_transpt1 IISP Sulph_transpt1 Sp/ptABC_transpt CbiN_ATP ABC_transptNodI	72
1.1	101386	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887)	388
2	118516	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	69
5	129012	ABC transporter related - Molecular Function: ATP binding (GO:0005524) - Molecular Function: ATPase activity (GO:0016887) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	67

Preceding Unigenes (1)

Unigene	Build
SGN-U267491	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
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