Sol Genomics Network

Unigene SGN-U281371

Unigene Basic Information

Unigene ID:	SGN-U281371
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	281371
mRNA sequence:	Length: 1267 bp

>SGN-U281371 Solanum tuberosum #4 (6 members)
GTCTTCTCCTTCACCCATTCTCTCTCTTTAAATATGGCTGAAAATAGTGGAAAAGGGATCGGAAGAAACTCAGGAACCTCTCGTGTTGCA
CTTTAATGAAAGAATTCTCTCCTCAATGTCACGAAGATCTATTGCTGCTCATCCGTGGCATGACCTAGAGATTGGGCCAGGTGCACCTTC
AATTTTCAACTGTGTGGTTGAAATAGGCAAAGGCAGCAAAGTCAAGTATGAGCTTGACAAAGCAAGTGGCCTTATAAAGGTTGACCGAAT
ACTGTACTCATCAGTTGTTTATCCACACAACTATGGTTTCATCCCAAGAACCCTTTGTGAAGACAGTGATCCAATGGACGTCTTGGTACT
GATGCAGGAACCTGTGTTACCAAGTACCTTTCTTCGTGCTCGTGCAATTGGATTGATGCCTATGATTGATCAGGGTGAGAAAGATGACAA
GATAATAGCAGTGTGTGCAGATGATCCTGAGTTTCGCCACTACACAGACATCAAGGAGCTCCCTCCTCATCGTCTTGCTGAAATCCGGCG
CTTTTTTGAAGACTATAAAAAGAATGAGAACAAGTCAGTTGCAGTTGAGGACTTTCTGCCTGCTGAAGCAGCTGTAGATGCCATCAAGTA
TTCCATGGACTTGTATGCTTCTTACATTGTGGAAAGTTTGAGGAAGTGACCTTGTTGAGGACATGTTGTTGTCATGACTGAAAATCTAAG
TAGAGAAGCCGGTTGACTTGTTGAAGATGGCTCCCTGAATTTCATATGCGTACTTTAGTTTAATGTGGTATTATCAAATACCATTTGAAA
TGCATGTAGAACTTTCAATTTTCATGTATTCAGAAAAGATGTGGAACAGAAGCATCAAGAAAACCACTGGTAATGTGCAGTGGTGGTGCT
GTAGAAAAAATGCTTGCTCAACATCTAAAAAATCTTACAATAAAAAAAAAAAAAAAAGGTACTGGACCATGTGGAAGTTGCCCATGTTTG
GGTGCACTGATGCAACCCAAGTGTTGGCTGAGGTTCAAGAGTGTAAGAAATCATACCCACAAGCATGGATCAGAATCATTGGATTCGACA
ATGTGCGTCAAGTGCAGTGTATCAGTTTCATTGCCTACAAGCCAGAAGGCTACTAAGTTTCATATTAGGAACAAAATTGTCTTTAGGGAC
ACTTTGTTTTTAAATGCTACTTAGGTTTCTTTGTAGTTTTTTTCTTAATTCCAACAAACTATTTATGTNTTCTTAATAATTTACTATTCG
GTTTATG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
rbcS1	ribulose-(1,5)-bisphosphate carboxylase/oxygenase S1

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 9 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	564	Pyrophosphatase	32
2	22621	Pyrophosphatase	23
5	56760	Pyrophosphatase	23
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	119089	Inorganic pyrophosphatase - Molecular Function: magnesium ion binding (GO:0000287) - Molecular Function: inorganic diphosphatase activity (GO:0004427) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: phosphate metabolism (GO:0006796)	20
5	129457	Inorganic pyrophosphatase - Molecular Function: magnesium ion binding (GO:0000287) - Molecular Function: inorganic diphosphatase activity (GO:0004427) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: phosphate metabolism (GO:0006796)	20

Preceding Unigenes (2)

Unigene	Build
SGN-U251600	Solanum tuberosum #3
SGN-U260966	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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