Sol Genomics Network

Unigene SGN-U281378

Unigene Basic Information

Unigene ID:	SGN-U281378
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	281378
mRNA sequence:	Length: 2184 bp

>SGN-U281378 Solanum tuberosum #4 (120 members)
GGGAGCAACGAGCAGGAGGGGTACACTCCCCCNTTACATAGGCCATTTCTGCAAACATGTTTGGCTCATTGATTGTGGTCCAACACTTCA
CTTCTATCACCAAAACTCGCAAAACAAATCTGAGCAAAATACAAAAATTCTTCCCTAGTATTTACACAAATAAACATACTGCATGACAGG
ATTAAGCCATCCCCCATATTTTTCCTCGAGTTCATGTGGATGGTCGTGGTGATTAAGAGTCACAAAAGGTGTTATTCCTTTGAGTAAGAG
AGAATCAATGAGTTTGTTGTAGAACGTAACACCAGCAAGATTTACTTTACCAAACCTTCCTCTAGGAAGGACTCTGCTCCACGAGATAGA
GAAACGATACGAATTCAAGCCAATAGAGTGCATTAACTCAACATCTTCCTGAAATCTATGGTAATGATCATCCGCTATATCTCCAGTATC
TCCATTATTTATCCTTCCTTACCACTACCTCGTGGAGGTAGAGAGGCTGTTTCCGGAGACCCTCAGCTCAAGAACATCAAATCTTTAGTA
TGACTAAAAACATCCCAATTACTCAACCCTTTTCCATCTTCAAGAAATCCCCCTTCAATTTGATAAGCTGAAGTAGTAGTTCCAAATAAA
AACCCATCTGGAAATTCTGATTTCTTCAATTTTTTCTGTTCCTCAAATGAATTTACAAATACAAAGAGTAGTAAACACAGAAAAAAATAA
GCAACTGAAATAATTAGTACTGCTAATCTTCATCTGGGGTTTAAAAAATTAACCCAAAATTTGATGGAGTTTCATCCGGAATCTAGCTCT
CAGTTAGCTATGGGTGAAGCCTTTGGTGCTTTTCAACCAACTCAAAAGCTTGATGTGGACATAGCAACTCATATCCATGTCTATGATGAT
GGTCCTGAACGAAGCTTACTGTGTGTAGAGGCAGCAGATCGACCTGGATTAATAGTTGATCTCGTCAAGATCATTACTGAAATAAACATT
GATGTTATATCAGGAGAATTTGACACCGAGGGACTGCTAGCTAAGGCAAAATTTCATGTAAGCTACAAGAACAAAGCTCTCATCAAGCCC
CTTCAACAGGTTCTTGCAAACAGCTTGCGCTATTACTTGAGGAGACCAACAACAGAAGAGTCGAGCTTCTAATACATTGCAGCATGAGAG
ATGAGACAATCAGTTGGTTTAACCATGCACTTTTTAACTGTCACAACAAAACGCGTGTTGAAACATGCATGAAAAAATCTAGAAAAAAAA
TATAATTTCATTACTGCTCTAACATTGTAAAATGCTACCATCTATACGATCATCGTCTTTGAATAAACATTTCCAAAGTGGTAAGAGCCA
TTTATATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTGTTCAAGGGAAGCAAAGATAAGCACTCAGAAATG
GCTTCTTCAGTGATGTCCTCAGCAGCTGTTGCCACCCGCGGCAATGGTGCACAAGCCAGCATGGTTGCACCCTTCACTGGCCTCAAGTCC
GCCGCCTCTTTCCCTGTTTCAAGGAAGCAAAACCTTGACATTACCTCCATTGCTAGCAATGGTGGAAGAGTCAGATGCATGCAGGTGTGG
CCACCAATTAACATGAAGAAGTACGAGACTCTCTCATACCTTCCTGATTTATCTGACGAGCAATTGCTCAAGGAAGTTGAGTACCTATTG
AAAAATGGATGGGTTCCTTGCTTGGAATTCGAGACTGAGCACGGATTTGTGTACCGTGAGAACAACAAGTCACCAGGATACTACGATGGC
AGATACTGGACCATGTGGAAGTTGCCCATGTTCGGGTGTACTGATGCAACCCAGGTCTTGGCTGAGGTGGAGGAGGCAAAGAAGGCTTAC
CCACAGGCATGGATCCGTATCATCGGATTCGACAACGTTCGTCAAGTGCAGTGTATCAGTTTCATTGCTTACAAGCCCGAAGGATACTAA
GTTCTAAAGATAACTAATTGCCCTATTTCTATAGGGACAGTTTGTTTGAATTCTCCTTTGGTTTTTCCCGGGAGAAACTGTATTCATTTT
CCCTTGTTTTCCTTCTTCTTTCTATTCAGTGTATGATCAATTCGAATTTCAATCAAGTTTACAAGAACTATTAATGACATTTGTTTCTTT
ACTAAAAAAAAAAAAAAAAAAAAC

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
bcS2	ribulose-(1,5)-bisphosphate carboxylase/oxygenase S2	ribulose-(1,5)-bisphosphate carboxylase/oxygenase
poac75	PoAc75 gene for actin	actin
ugpase	UDP-glucose pyrophosphorylase (UGPase) gene	UDP-glucose pyrophosphorylase

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	2
Solanum tuberosum	MXLF	Leaves	6585	7
Solanum tuberosum	PPC	leaf 6 week old	5062	34
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	27
Solanum tuberosum	STM	mixed tissues	14805	13
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	14
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	18
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (120)

Alignment image suppressed for unigene with 120 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	124	RuBisCO_small	107
2	22148	RuBisCO_small	54
5	56385	RuBisCO_small	53
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	118508	Ribulose bisphosphate carboxylase small chain - Cellular Component: ribulose bisphosphate carboxylase complex (sensu Magnoliophyta) (GO:0009573) - Biological Process: carbon utilization by fixation of carbon dioxide (GO:0015977) - Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984)	74
5	129006	Ribulose bisphosphate carboxylase small chain - Cellular Component: ribulose bisphosphate carboxylase complex (sensu Magnoliophyta) (GO:0009573) - Biological Process: carbon utilization by fixation of carbon dioxide (GO:0015977) - Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984)	70

Preceding Unigenes (2)

Unigene	Build
SGN-U255435	Solanum tuberosum #3
SGN-U255448	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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